- Probe CUST_20985_PI390587928
- Source Contig U35_39421
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20985_PI390587928 | Hv_44K_v2 | TGGGCGAGTTGACCCTCCTATACAAGTTCAATATGTTTGAAGTGTTATGTTTTCTCAATG | 323 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 20.915 | 4.719 | 1.297 | 0.496 | 0.718 | 0.679 |
| Raw | 218.208 | 73.725 | 19.068 | 10.089 | 4.509 | 5.206 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4638.1 | 797 | 7e-23 | 39 - 98 | 98 | 59 / 60 | minus | ABC17632 ABC35562 |
| Harvest21 | ABC35562 | 442 | 3e-25 | 324 - 383 | 100 | 60 / 60 | plus | ABC35562 |
| Harvest35 | U35_39421 | 442 | 3e-25 | 324 - 383 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_39421 442 Hv_44K_v2 GAGAGTATCTGGAAGTTTCTGTCGGTGCATATGGTGTTGGTGGGCAACGATTTGACGGCA CTCTATATTTTACACCTGAGGAACGCGGTAGACTCAATGGTGCACTTCATGTTGGTACAT GTGAGATTGAGGTCACTGTAACCTGGTCCCTTATCATGTCGTTCTAGAAGCAATCTGACT TCACATGTGAGATTGAGGTCACTGTAGCCTGGTCCCTTAGCATGCCTTTCTAGAAGCAAT CCGACTTCACATGTGAGATTGAGGTCACTGTAACCTGGTCCCTTATCATGTCGTTCTAGA AGCAATCTGACTTCACTTGTGTCTGGGCGAGTTGACCCTCCTATACAAGTTCAATATGTT TGAAGTGTTATGTTTTCTCAATGTAATGACAATATGTTTTAATTAATATGGTTGCATGTA TGGACAAAAAAAAAAAAAAAAA
Homology of Contig U35_39421 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |