barSeed - Barley Seed Development Database

Probe CUST_20981_PI390587928

Source Contig U35_39425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20981_PI390587928	Hv_44K_v2	ATGCTTTGCAAGGGCATGCGTGTCGATGCCGATGACGATGACGACTGATAGGAGCAAGCC	574	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.067	1.855	2.082	1.620	0.505	0.482
Raw	14.946	43.195	39.493	47.726	3.569	4.681

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31941.2	1207	7e-23	518 - 577	98	59 / 60	plus	ABC31744 ABC46474
MLOC	MLOC_31941.6	1919	7e-23	515 - 574	98	59 / 60	plus	ABC31744 ABC46474
MLOC	MLOC_31941.4	2241	7e-23	516 - 575	98	59 / 60	plus	ABC31744 ABC46474
MLOC	MLOC_31941.3	1745	7e-23	516 - 575	98	59 / 60	plus	ABC31744 ABC46474
MLOC	MLOC_31941.5	2668	7e-23	516 - 575	98	59 / 60	plus	ABC31744 ABC46474
JLOC1	JLOC1_20915.3	2286	4e-23	519 - 578	98	59 / 60	plus
JLOC1	JLOC1_20915.2	1859	4e-23	519 - 578	98	59 / 60	plus
Harvest21	ABC35569	634	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_39425	634	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_39425 634 Hv_44K_v2
GAATTTCCCCATCTCCGAAACCCTGGCCGCATCCACCCACCATGTCGCCGCCGCCGCCGC
CGCCGCTGCCGGACGAGCTCCTCGAGGAGGTCTTCTTCCGCCTCCCGCCGGACGAGCCCG
AGCACCTCCTTTGCGCCTCCCTCGTCAGCAAGGTCTGGCTCGCCCTCCTCTCCGACCCTC
GCTTCTATGCTCGGTACCGCGACTTCCATGGAGCTCCCCCCATGCTGGGCTTCCTTTGTT
CCTCGCGCTCCATCTCCGAAGATAACGACCCGTACTTCTTCCCCACCACGAAATTCCGTG
CGCGCATTCCCGACGACGACTGGGAGAAGTTCCGCTACGCTGCGTGGGACTGCCGCCATG
GCCGCGTTCTCCTCGCCGATGACTGTTTCATCCCTGATTCCCTCGTCGTTTGGAACCCCA
TGACGGGCTGCCGGAGGGAGCTGGACCAGCCCGGCCATGTCGGCAGCATCTATGCGGCAG
CGGTGCTCTGTGCGGTGGCCGGCTGTGACCACCGTGCGTGCCACGCAGGCCCCTTNCAGG
TGGCCTTCATCGGTACGACTTATGATGATGGCGAATGCTTTGCAAGGGCATGCGTGTCGA
TGCCGATGACGATGACGACTGATAGGAGCAAGCC

Homology of Contig U35_39425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None