barSeed - Barley Seed Development Database

Probe CUST_20975_PI390587928

Source Contig U35_15471

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20975_PI390587928	Hv_44K_v2	CCCGTGTGGTTTAAGATAATAAACATGTATGTGTTTCAAATTGGCCAAGATACAGTCATA	1611	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.018	0.624	1.437	1.358	1.851
Raw	15.186	508.264	16626.053	55197.967	19249.133	28902.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9162.1	4363	8e-25	4089 - 4148	100	60 / 60	plus
Harvest21	ABC03144	1717	3e-25	1612 - 1671	100	60 / 60	plus	ABC03144
Harvest35	U35_15471	1717	3e-25	1612 - 1671	100	60 / 60	plus

Contig Sequence (1717 bp)

>U35_15471 1717 Hv_44K_v2
GGACACCACCGATCCTGGTTGGCAACCATGGCAGCCGCTGGCCACCTCATCCTCCTGTCA
TGCGTGCTCCTTCACGCCCTCCTCGCCGGTCCGGCGGAGGGTCTGGTCCGTGTCGCGCTG
ACGAAGCGGCCGGCGGACGAGGACGGACGCGTCGTCGCCGGGGAGGACGCGCAGCGCCTC
CTCGCGTGGCGGCACGGCCTCGTCTACAACTCCGCCGCCCACGTGCCCAAAGAAGGCGCG
GAGGGCCACGTCGTGGCGCTTAAGAACCACCTCAACGCCCAGTACTACGGTGAGATCGCC
ATCGGGACGCCGCCGCAGAACTTCACCGTCATCTTCGACACGGGCAGCGCCGAGTTCTGG
GTGCCCTCCTCCAAGTGCTTTCTCTCGATTGCATGCTACCTCCATGCGAGCTACAAGGCC
AGCAAGTCCACCACTTACAAGAAGAACGGAAAAAGGGTTGCACTTCATTATGGAACCGGT
ACAATTTCTGGATATATTAGCCAGGACAATGTCCAAGTTGGTGGCCTAGTTGTAAAAAAT
CAGGATTTCATCGAAGCTACCTTGGAACCGGGTATAACTTTCATGTTTAGGAAATTCGAT
GGCATTCTCGGTCTTGGGTTTAAAGAAATCGCAAAAGGCAATGTTGAACCTGTCTGGTAC
AACATGGTTAATCAACATCTGGTTGGTAGCCCCATTTTCTCATTCTGGTTCAACCGACAT
GCCGACAATGGGCAGGGGGGAGAAATTGTGTTTGGAGGAATTGATCCTAAGCATCACAAG
GAAGAGCATAAATACGTTCCTATTACTAAGAAGGGATACTGGCAGTTTGATATGGGTGAT
GTCTTGATTGGAGGAAACTCCACAGGATTATGTGCATCTCGATGTGCAGCTATAGCAGAT
TCGGGAACTTCGTTGCTTGTTGGCCCCACAGCCATAATTGCTCAGATAAATGAAAAGATT
GGTGCGCCTGGAATTCTCAGCCAAGAGTGCAAGGCAGTTGCTTCTCAGTATGGGCAACGG
ATCTTACAACTGATGCTAGATGGGATCGACCCGACAAAAATATGTCCTTCTATTGGTCTA
TGCATTCAGAATGGAACTCAAGGTGTGAGCTTTGGTATTCGGAATGTGGTAGATGATGAA
GCTGGGAGATCAAATGATGCCATGTGCCATGTTTGTGAGATGGCTGTTATGTGGGCAAAG
AACCAACTTGCACAGGATCGAACACGGGATCTTATATTGAAGTACATTAATAAGCTATGT
GACTATATCCCTAGCCCTATGGGAGAATCATCAGTGGACTGCAAAAGACTTGAATCCCTG
CCCGACGTCGCCTTCACCATCGGCGGCAAACAGTTTGCCCTCAAACCAGAGGAATACATC
CTGAAGGTCGGTGACGGAGATGCTACTCAGTGCATTAGTGGATTCATAGCCATGGATATT
CCTCCCCCAAATGGTCCTATCTGGATCTTGGGCGACATATTCATGGGAGCCTATCACACT
GTCTTCGACTATGGTAACATGAAGGTTGGCTTTGCGAAGGCGGCATAGGTAACCAGACGA
GCCGCAAAGGATTTGTCTTTCATGACATTTTCTTATAGATGTTTCATAATTCCCGTGTGG
TTTAAGATAATAAACATGTATGTGTTTCAAATTGGCCAAGATACAGTCATAATTCAATAT
GGGAAGGATTAATATTTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g47410.2	523	protein\|aspartic proteinase oryzasin-1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g16160.1	506
Arabidopsis v10	AT1G11910.1	506	\| Symbols: APA1, ATAPA1 \| aspartic proteinase A1 \| chr1:4017119-4019874 REVERSE LENGTH=506