barSeed - Barley Seed Development Database

Probe CUST_20973_PI390587928

Source Contig U35_15473

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20973_PI390587928	Hv_44K_v2	GGCGGCGGGATGATTTATATATGAGATGCACGTCATTTTGCGGGGTTTTGTTTTCTTAAT	1270	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.199	1.574	1.091	0.783	0.320	0.332
Raw	18759.067	20915.463	12935.633	14518.193	2090.953	2381.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367229	1495	2e-24	1235 - 1294	100	60 / 60	plus	ABC04817 ABC36768
MLOC	MLOC_39148.1	1138	2e-24	139 - 198	100	60 / 60	minus	ABC04817 ABC36768
JLOC1	JLOC1_25507.1	1229	8e-25	861 - 920	100	60 / 60	plus
Harvest21	ABC51396	497	3e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC04817	1465	3e-25	1217 - 1276	100	60 / 60	plus	ABC04817
Harvest35	U35_15473	1549	3e-25	1271 - 1330	100	60 / 60	plus

Contig Sequence (1549 bp)

>U35_15473 1549 Hv_44K_v2
TGGTTCTGGTCCGGAATTCCTCGAGCACTGTTGGCCTACCCCCTCCCTATTTCTCGCCGT
CGCGTCCAAGAGCAGAACGCATCGACCGATCGGAGAATCAATGGCGATGGTGACGGCCAA
GCTCAGCTCCCCGGCCACCGCCCGGCTCGGCCCCGTCCGGTCCGCGCAGCCCGCCCGCCG
CGCCTCGCTCGTCCGCGTCCGCGCCTCCGGCGGCTCCTACGCCGACGAGCTCGTCTCCAC
CGCGAAAACTGTTGCTTCCCCTGGCCGTGGGATCCTTGCGATCGACGAGTCAAGTGCAAC
ATGTGGAAAGAGATTGGCATCTATTGGTTTGGACAACACGGAAGTTAACCGCCAGGCTTA
CAGGCAGCTTTTGCTGACCACTGCTGGTCTTGGTGAATATATCTCTGGTGCTATTCTTTT
TGAGGAAACTCTCTACCAGTCCACTACAGATGGCAAGACCTTTGTTGACGTCTTGAAGGA
CCAGAATATCATGCCTGGTATCAAGGTTGACAAGGGTTTGGTTCCATTGCCCGGATCCAA
CAATGAATCCTGGTGCCAAGGTCTTGATGGTTTGGCCTCAAGGTGTGCTGAGTACTACAA
GCAGGGTGCACGCTTTGCGAAGTGGCGGACTGTTGTTAGCATCCCTTGTGGTCCTACTGC
ATTAGCTGTCAAGGAAGCGGCATGGGGACTTGCTCGCTATGCTGCTATTGCTCAGGACAA
TGGTTTAGTGCCAATTGTGGAGCCAGAGATCCTTCTTGACGGTGACCATGGCATCGAGAG
AACTCTCGAGGTAGCAGAGAAGGTGTGGTCCGAGGTGTTCTTCTACCTGGCCCAAAACAA
TGTTCTGTTTGAGGGCATCCTGCTGAAGCCCAGCATGGTTACCCCTGGTGCTGAGCACAA
GGAGAAGGCTTCTCCAGAAGCCATTGCGCAGAACACCCTCACAATGCTGAGGAGGAGAGT
ACCACCTGCTGTCCCTGGAATCATGTTCCTTTCGGGTGGACAGTCCGAACTGGAGGCGAC
CATGAACCTGAATGCGATGAACCAGTCCGCCAACCCGTGGCACGTGTCCTTCTCCTATGC
CCGGGCCCTACAGAACTCGGTTTTGAAGACGTGGCAGGGGCAGCCCGAGAACATCGAGGC
GGCGCAGAAGGCCCTGCTGGTCCGCGCCAAGGCCAACTCGTTGGCGCAGCTTGGCAGCTA
CACCGGCGAGGGCGAGAGCGACGAGGCCAAGAAGGGCATGTTCCAGAAGGGTTACACCTA
CTGATGAGGCGGCGGCGGGATGATTTATATATGAGATGCACGTCATTTTGCGGGGTTTTG
TTTTCTTAATTATTATTGGTGTGAATAACAACCAATCGCCAGCGTGTTGGTGCCAAGGAC
TGTTAGCTGTATTGGCAGTGCGGAAACTCTAGAGTTGCCTGAAGTTATATTTATGAGAAC
AAACAATTACTGTATGCATACCCTGAGAAAGTTGATGATGAGAACAGCTTTGGTTATGAA
AAAAAAAAAAAAAAATGGAGATTTACCCAGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g02880.1	389	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi2g01350.1	388
Arabidopsis v10	AT2G01140.1	391	Aldolase superfamily protein \| chr2:95006-96491 REVERSE LENGTH=391