barSeed - Barley Seed Development Database

Probe CUST_20972_PI390587928

Source Contig U35_15474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20972_PI390587928	Hv_44K_v2	AATAACAGTTGATGGCCTGTAGTTAGGCCCTGTTTGGAACCACTCAGATTATATAATCTG	2247	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.802	1.262	0.850	0.416	0.437
Raw	2537.370	5114.447	3083.263	3072.740	568.895	638.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73713.2	3437	2e-24	17 - 76	100	60 / 60	minus	ABC03330 ABC03331 ABC50136
MLOC	MLOC_73713.1	3313	2e-24	17 - 76	100	60 / 60	minus	ABC03330 ABC03331 ABC50136
JLOC1	JLOC1_49083.2	3592	8e-25	3287 - 3346	100	60 / 60	plus
JLOC1	JLOC1_49083.1	3381	8e-25	3076 - 3135	100	60 / 60	plus
Harvest35	U35_15474	2331	3e-25	2248 - 2307	100	60 / 60	plus

Contig Sequence (2331 bp)

>U35_15474 2331 Hv_44K_v2
GTAAACTGGACCCAGTTGTTGGCAGACAGGATCAAATTGAGCGTGTAACTCAAATTTTGG
GCAGGAGGACAAAGAACAACCCATGCTTAATTGGAGAGCCTGGTGTCGGCAAGACCGCTA
TTGCAGAGGGGCTTGCGCAACGTATTTGTAATGGGGATGTTCCGGAAACAATTGAAGGAA
AGAAGGTTATTACCCTTGACATGGGGCTCCTTGTTGCTGGTACCAAGTACCGTGGAGAGT
TTGAAGAAAGGCTGAAGAAGCTTATGGAAGAAATTAAGCAAAATGATGATATTATACTCT
TTATTGATGAAGTGCACACGTTGATCGGAGCAGGTGCAGCTGAAGGTGCAATTGATGCTG
CTAACATCTTAAAACCAGCTCTTGCAAGAGGTGAACTGCAGTGCATTGGTGCCACAACAC
TGGATGAGTACAGGAAACATATCGAGAAAGATCCTGCTTTGGAGCGAAGGTTTCAACCAG
TCAAGGTTCCAGAGCCCACTGTTGAAGAATCAATACAAATCTTAAGAGGACTTCGTGAGA
GATATGAACTTCATCATAAGCTGCGATACACAGATGATGCTTTAGTTGCTGCAGCGCAGT
TATCGTATCAGTATATCAGTGATCGCTTCCTGCCTGACAAGGCTATTGACTTGATTGATG
AAGCGGGGTCCCGTGTTAGGCTCAGGCATGCACAGCTACCTGATGAGGCCAAGGAGCTGG
ACAAAAAACTTCGGCAAATAACAAAAGACAAGAATGAGGCTGTGCGTGGCCAAGATTTTG
AGAAGGCTGGGGAATTAAGAGACGAGGAAATGGAGCTGAAGGCCCAAATTACAGCCATTA
TTGACAAGAGCAAGGAAATGGTTAAAGCAGAGACTGAATCCGGCGAAGTTGGTCCTCTTG
TCACAGAGGCAGATATTCAACACATCGTCTCATCATGGACTGGTATACCTGTGGAGAAAG
TCTCATCTGATGAGTCGGACCGCCTCCTTAAGATGGAAGAGACACTCCATACACGTATCA
TTGGGCAGGATGAAGCTGTCAAAGCTATTAGCCGTGCTATCCGCCGTGCTCGTGTTGGCC
TCAAGAATCCAAATCGACCCATTGCTAGCTTCATATTCTCTGGACCAACTGGTGTTGGTA
AATCAGAATTAGCAAAGGCTCTGGCATCCTACTACTTCGGCTCAGAGGAAGCCATGATCA
GATTAGATATGAGTGAATTCATGGAGAGACATACAGTGTCCAAACTTATCGGATCACCTC
CAGGTTATGTTGGCTACACTGAGGGAGGTCAACTAACAGAAGCAGTTCGTCGCCGTCCAT
ACACAGTTGTTCTCTTTGATGAGATTGAAAAGGCACATCCAGATGTCTTCAACATGATGC
TTCAGATCTTAGAAGATGGGAGGCTGACAGATAGCAAGGGACGGACAGTTGATTTCAAGA
ACACACTGTTGATCATGACATCGAATGTCGGAAGCAGTGTCATCGAGAAGGGAGGCCGGA
AGATTGGGTTTGACCTTGACTCTGATGAGAAAGATACCAGCTATAACAGGATCAAGAGCT
TGGTGACCGAGGAGTTGAAGCAGTATTTCAGGCCTGAGTTCTTGAACAGATTGGATGAGA
TGATTGTGTTCAGGCAGCTGACTAAGTTGGAGGTGAAAGAGATAGCTGATATTATGCTCA
AAGAGGTGTTTGACAGGCTCAAGGCAAAGGAAATAGACCTCCAGGTAACAGAGAAGTTCC
GGGATAGAGTTGTCGACGAGGGTTACAACCCAAGCTATGGTGCCAGGCCTCTGCGACGGG
CTATTATGAGGCTTTTGGAAGACAGCCTCGCGGAGAAGATGCTGGCTGGCGAGGTCAAGG
AAGGTGATTCTGCTATTGTTGATGTGGATTCAGATGGTAAGGTGGTGGTTCTCAACAGTG
GGAGTGGTATTGCAGAGCCGCTGGCGCCTGCCCTGAGTGCCTAGTTGGGGGTCCTTTTTA
TTTCGCTATCTCCGCTTGGGGTCCTGGTGATGGTACCTAGATTAATATCACTCCCCTTTC
AGTCATGTGTTCTACTCTTCCTTTTTCTCTCTCTTCTTTCACTCTCTTGAAGTTTCAAGT
TTGAAGCGAGGCACTAGAAATTGTTATGTAAACAAAACAAACATAGATGCATGTATGAGC
AAGCTGTATGCTATATCTTTTGAGTTCAAAAAAAAAAAAAAAAATTTTTCTTTTTCTTTT
TTTGAGTGGGCAGTTGCTCTGTTCCTGAATAACAGTTGATGGCCTGTAGTTAGGCCCTGT
TTGGAACCACTCAGATTATATAATCTGTTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g32560.1	919	protein\|ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g44340.3	922
Arabidopsis v10	AT5G50920.1	929	\| Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 \| CLPC homologue 1 \| chr5:20715710-20719800 REVERSE LENGTH=929