barSeed - Barley Seed Development Database

Probe CUST_20967_PI390587928

Source Contig U35_15479

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20967_PI390587928	Hv_44K_v2	TCTATGAACACTTAAGTGGAATCAGCTGAAGGAATGTCCACATTGTTTTCTCGTAAAAAA	3039	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.547	2.433	1.221	0.740	0.319	0.418
Raw	3730.710	5605.890	2450.507	2375.540	351.343	499.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36344.2	3168	9e-22	3057 - 3111	100	55 / 55	plus	ABC03351
MLOC	MLOC_36344.1	3089	9e-22	2983 - 3037	100	55 / 55	plus	ABC03351
JLOC1	JLOC1_23385.1	3201	5e-22	2983 - 3037	100	55 / 55	plus
Harvest21	ABC03352	3124	3e-25	3040 - 3099	100	60 / 60	plus
Harvest21	ABC03351	714	3e-25	12 - 71	100	60 / 60	minus	ABC03351
Harvest35	U35_15479	3145	3e-25	3040 - 3099	100	60 / 60	plus

Contig Sequence (3145 bp)

>U35_15479 3145 Hv_44K_v2
GGGGCCTTCGCGTCGGGCCTCGCGGGCCGCCTCTTCGGGGGCCGCCGCGCCGCCGCGCGC
TCCTCGTCCTCCGCCGCCGCCGTCTTCGAGCGCCGATTCGCCTCCGCCGCGACGAAGAAC
TCGTACGACGAAATCCTCACGAGCCTCGCCAAGCCGGGAGGCGGAGCGGACTTCGGCAAG
TACTACAGCCTGCCCGCGCTCGCCGATCCGCGGATTGATCGGCTACCCTACTCGATAAGG
ATTCTGCTCGAGTCGGCAATCAGAAATTGCGATGAGTTCCAGGTCACGGGGAAGGACGTT
GAGAAGATCCTAGACTGGGAGAACAGCGCCACCAAGCAAGTCGAAATCCCGTTCAAGCCA
GCCCGTGTCCTCCTCCAGGATTTCACTGGTGTCCCAGCTGTTGTTGATCTTGCTTGTATG
AGGGATGCTATGAGCAAACTTGGCAGTGACCCGAACAAAATTAATCCGCTGGTACCTGTA
GACCTTGTTGTGGATCATTCAGTACAAGTTGATGTGGCAAGATCGGAAAATGCTGTTCAG
GCAAATATGGAGCTTGAGTTCAGCCGTAACAAGGAGCGGTTTGGGTTTTTGAAATGGGGT
TCCACTGCATTCAATAACATGCTTGTTGTTCCACCTGGATCTGGAATTGTTCACCAGGTG
AATCTTGAATATCTGGCCAGGGTTGTGTTCAACAATGGTGGAATACTCTACCCTGATAGT
GTTGTCGGCACAGATTCCCACACAACTATGATAGATGGTCTTGGTGTTGCTGGATGGGGA
GTTGGTGGTATAGAGGCAGAAGCTACAATGCTTGGGCAGCCAATGAGCATGGTCTTGCCA
GCAGTTGTTGGTTTCAAGTTATCAGGGAAGCTGAGGAATGGAGTTACAGCCACAGACTTG
GTTCTAACAGTAACTCAAATGCTTAGGAAACATGGTGTCGTTGGGAAGTTTGTTGAATTT
TATGGGGGAGGTATGGGTGAACTATCACTTGCTGATAGGGCTACTATCGCAAACATGGCA
CCAGAATATGGTGCAACTATGGGTTTCTTCCCAGTTGATGCAAAGACATTGGACTACCTG
AAGCTAACTGGCAGAAGCGATGAAACTGTGGCCATGATAGAGACTTACCTGCGCGCCAAT
AATATGTTCGTCGACTACAAGCAGGTTCAAGCTGAAAGAGTGTATTCATCTTATCTTGAA
CTTGACTTGGATGAGGTGGAACCATGTCTGTCTGGACCAAAACGGCCTCATGATAGAGTG
ACATTGAAGAACATGAAGTCAGATTGGCTTTCTTGCCTGGACAACAAAGTAGGGTTCAAG
GGTTTTGCTGTCCCCAAGGAATCACAGGGTAAAGTTGCTGAGTTTTCGTTCCGTGGGACG
CCAGCAAAGATAAAGCATGGTGATGTTGTAATTGCGGCTATCACCAGTTGCACCAACACA
TCAAATCCTAATGTAATGCTGGGAGCTGCGTTGGTTGCCAAAAAGGCTTGTGACCTAGGC
CTGGAGGTGAAACCATGGATTAAGACAAGCCTTGCGCCAGGTTCTGGTGTTGTGAAGAAG
TACTTGGACAAGAGTGGTCTGCAGAAGTATCTTAACCAGCTTGGCTTCAATATTGTTGGC
TATGGTTGTACAACCTGCATTGGAAACTCCGGAGATCTTGATGAATCCGTAGCTGCTGCA
ATTACCGATAATGATGTTGTCGCTGCTGCTGTGTTGTCTGGTAACAGGAATTTTGAAGGC
CGTGTACATGCATTGACCCGAGCAAATTATCTCGCATCTCCCCCATTGGTTGTGGCCTAT
GCACTTGCTGGCACGGTTAATATTGATTTTGAGAAAGAACCAGTAGGCATCTCAAAAGAT
GGGAAAGAGGTTTACTTCAGGGATATTTGGCCTTCCACTGATGAGATTGCTGAGGTTGTT
AAGTCGAGCGTGCTCCCAGACATGTTCAAGGGCACATATGAGGCAATCACCAAAGGAAAT
CCTATGTGGAATGAGCTGCCTGTATCAGCAAGCACTCTCTACCCATGGGATCCAAAATCA
ACATACATCCACGAGCCTCCTTATTTCAAGGACATGACAATGACCCCTCCTGGTGCACGG
CCTGTGAAGGATGCGTATTGTCTTCTCAACTTTGGTGACAGTATCACAACTGATCACATA
TCCCCAGCTGGAAGCATCCACCCAGAAAGCCCAGCTGCCCAATATCTAAAGGAGCGCAAT
GTTGAAAGGAAGGATTTCAACTCATATGGGAGTCGCCGAGGTAACGATGAGATCATGGCT
AGGGGAACTTTTGCCAACATTCGTATTGTGAACAAGTTCTTGAAGGGAGAGGTTGGCCCC
AAGACCATCCATGTTCCATCAGGGGAGAAGCTTGCTGTTTTTGATGCTGCTATGAAATAC
AAGAATGAAGGGCATGACACTATCATCCTGGCTGGTGCTGAGTATGGCAGTGGAAGCTCT
AGGGATTGGGCTGCAAAGGGTCCAATGCTTCAGGGAGTGAAGGCTGTGATATCCAAGAGC
TTTGAGAGGATTCACCGGAGCAATCTCGCTGGAATGGGCATCGTCCCTCTATGCTTCAAG
GCTGGAGAGGACGCAGACACTCTTGGCTTAACAGGCCATGAGCGCTACACCATTCAGCTT
CCCACTGATGTGAATGAAATCAAGCCTGGCCAAGATGTTACAGTCACAACAGACAACGGA
AAGTCGTTCACGTGCACACTCCGCTTTGACACCGAGGTGGAGATTGCATACTACACCCAT
GGTGGTATCCTACCATATGTCATCAGAAAGATCGCTGCGGAGCAATAGGGTGTGTTCTCT
AGATGATTCCGATGAGGCAAATTGTAATTGTTGTAAACAGTTTCTTTAGTAAGTCTCGTT
TGAGGAGTACCCCCTCAAATAACATCTGAGATGTCTGCAGAGAACTCAGAAATTTTGAAC
GCGTAACACGCTAGAGGATCATGGCCTGGTTTTCGTTTCAAGGCACCATGTTAATAATAT
GCCTCACAATTGATGAGATGCTTTTGCATATTGTAACGGTCTATGAACACTTAAGTGGAA
TCAGCTGAAGGAATGTCCACATTGTTTTCTCGTAAAAAAAAAAAAAAAAACTTCTGGTTG
TTTTTTCAAAACAAATTAAGAAAAA

Homology of Contig U35_15479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04410.1	987	protein\|aconitate hydratase protein, putative, expressed
Brachypodium v1_2	Bradi1g75960.1	995
Arabidopsis v10	AT2G05710.1	990	\| Symbols: ACO3 \| aconitase 3 \| chr2:2141591-2146350 FORWARD LENGTH=990