barSeed - Barley Seed Development Database

Probe CUST_20962_PI390587928

Source Contig U35_41746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20962_PI390587928	Hv_44K_v2	TTTGAGTGCCGCTTCAGGGCATCGAGAAGCCCTCCTACTTCGATCGCTGGATCAACCTGA	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_211.2	1052	7e-23	555 - 615	98	60 / 61	plus	ABC02438 ABC02441 ABC02445
Harvest21	ABC36912	554	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_41746	554	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_41746 554 Hv_44K_v2
GATTCGATCCCGAGTTTCCCTTATCTGGAGTTTGCGAGGCGACCCGCTCCTGCTCAGAGC
GCGCGCATATTGCCGATCATGGCTGCGCGCAGAGTGCCGTACGCACAGGGGCAGGGCCAC
CAGCTGCAGCAAGATTTCGATTTCTTCTTGGTAGTGGACTTCGAGGCGACGTGCGAGAAA
GACGCGCGGATCTACCCGCAGGAGATCATCGAGTTCCCCGCCGTCCTCGTCGACGGCGCC
ACCGGCCACCTCGCGTCCGCTTTTCGCTGCTACATCCGCCCGAAACACCATCCTGCGCTG
ACCAAGTTCTGCAGGGACCTCACCGGCATCCGGCAGGAGGACGTCGATGGCGGCGTGGAT
CTCGGCCAGGCGCTCCGGCTGCACGACGCTTGGCTGAAGGCGGCGACGACGACGGNGGCA
GGGACCAAGAGATGCGATGGCCGCTTGGCCGTCGTTACGTGGGGAGACTGGGATTGCCGC
ACCATGCTCGAGTTTGAGTGCCGCTTCAGGGCATCGAGAAGCCCTCCTACTTCGATCGCT
GGATCAACCTGAGG

Homology of Contig U35_41746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g27780.1	245	8e-60
Arabidopsis v10	None