barSeed - Barley Seed Development Database

Probe CUST_20961_PI390587928

Source Contig U35_27453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20961_PI390587928	Hv_44K_v2	GAGGACGATGTACTATGTACTGTATGACGTAGTATTATGCAACTCAACTTTGGAGCGGCC	428	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.267	1.639	1.024	0.896	0.478	0.378
Raw	111.206	225.909	121.762	172.928	31.570	27.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24356.1	1574	6e-21	155 - 207	100	53 / 53	minus
JLOC1	JLOC1_24357.1	1493	6e-21	1287 - 1339	100	53 / 53	plus
Harvest21	ABC43976	515	2e-21	429 - 481	100	53 / 53	plus	ABC43976
Harvest35	U35_27453	814	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_27453 814 Hv_44K_v2
CAGCCACCACCGGCTGCCTCGCCGCCGGTGCCGTTGTGGCCCTGGTCGACGAGATCGGCT
CCGCCGCCTCCATCTCCCAAGGCCAAAACCTCAAGGTATCCGTCGACATGTCCGTCGCCT
TCCCCGACCTCTCCCAGGCCCGCCCGGGGGACCGGCTGAGCATAACGGCAAGGGCGCTCG
GGCACAAGGGCGCCTACTCCGGCACGCACGTGCTCTTCACCAACGCTGCCACCGGCAACG
TCGTCGCCGAGGGCAGGCACTCCCTCTTCGGGAACATGAAGAAGTCGCCACCCAAGCCAG
CAGCCACCACTCACAGGAGCAACTTGTGATAGGTGCCTCTGCCTGCTCCTAAGTACCAAG
GAAATGTGTTCTGAACGGCCGCCTACTTCTCTCTTATCAGTTCCGCTTGTATATGTAACC
TTGATTCAGAGGACGATGTACTATGTACTGTATGACGTAGTATTATGCAACTCAACTTTG
GAGCGGCCGCTGCGGCGACTAGGGACTAGCCAAACTCTAGCACCAGAATGGGCGGTAGCG
GGGAAGGAGCAGTGGTTTCCGGGGTACTTGGGGGAAAGGAGGAAGAAGCAGAGGAGGATT
GATTAGCAGGGGATTTTAAATCACAAGGTTGTTTTTGCAAAACAACAAATGAACTAAGTC
TTGGATATTCTTTTTCGGACGAAGGGAGTATGAGTATTTGTTATGCCCTGTTGTGCCATG
GTGATTTATGTATAACCGAAATTCGGAATGAACTCAAAGTTGGCATGTGCAAGTGCGTGC
AATATTCTCAGGAGCAATTTCTCAATGTTGAATG

Homology of Contig U35_27453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None