barSeed - Barley Seed Development Database

Probe CUST_20949_PI390587928

Source Contig U35_39438

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20949_PI390587928	Hv_44K_v2	AAGAAGCTTGTGAGCGGGTCATCATCCACGATGCCCAAACGCCGTGGCCGGTCTCGCCTT	534	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78234.1	1814	7e-23	757 - 813	100	57 / 57	plus	ABC22963
MLOC	MLOC_78233.2	4088	7e-23	3261 - 3317	100	57 / 57	minus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.1	3391	7e-23	2424 - 2480	100	57 / 57	minus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.3	3631	7e-23	2423 - 2479	100	57 / 57	minus	ABC04928 ABC22963 ABC48407
JLOC1	JLOC1_52141.1	1775	4e-23	698 - 754	100	57 / 57	plus
JLOC1	JLOC1_52140.2	3666	4e-23	2706 - 2762	100	57 / 57	minus
JLOC1	JLOC1_52140.1	3383	4e-23	2423 - 2479	100	57 / 57	minus
Harvest21	ABC35594	614	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_39438	614	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_39438 614 Hv_44K_v2
GTGCAGATGATCGAAGAGGCGATCGAGGCGCTGGGCGAGGAAGGGGGCTCGGCGGAGTCC
GCCATCTCGGACTTCATCCGCGGCAGGTACCCCGGCGTCCCCGCCGCGCACGACAGCTTC
CTCCGCTACTACCTCGCCAAGCACGTCGCCGAGGGCCTCTTCGTCTGCGCCGCGTCTGGC
CGGTACTCGTGCTGCTCCGACGACGAGCCCGAGTCCGTGCTCGCACTCACCGAGGTCCCG
GCGTCGGCGACGGCTGCGCCGATACAGCCCAAGCGCGCCCGCGGTCGGCCTAAGAAGGAT
GACTCGCTGGTGCTGGCCAAGCGCGGCCGCGGACGGCCTAGGAGAGATGCTTGGCAGGCC
GCTGCAACGGCGGTGAGTGCTGGGCCTCCGACGACAGGCCCCAAGCGCGGTCCCGGTCGG
CCTAGGAAGTATGGCTCGCCGGCGGCGGTGACCGCTGGGTCTCCGTCCACAGGGGACAAG
CGCGCCCGCGGTCGGCCTCGGAAGGATGGCTCCCAGCCGAAGCCGGCTTCTCGCAAGAAG
CTTGTGAGCGGGTCATCATCCACGATGCCCAAACGCCGTGGCCGGTCTCGCCTTCTGACG
GAGGTAGGGGCGGA

Homology of Contig U35_39438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None