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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20947_PI390587928Hv_44K_v2TTTGCATTTTTTACTCCGCCATTCTGTGCAGTGCAATCTAGCATGTTTTAACTGTACACA652GeneList: orange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7201.1713.8244.3500.9580.601
Raw 6.99118.81155.794101.0506.7813.914



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0325210643e-25653 - 71210060 / 60plus
Harvest35U35_154808433e-25653 - 71210060 / 60plus



Contig Sequence (843 bp)

>U35_15480 843 Hv_44K_v2
TAAAGTTACGGCAAGCTATGGTTATAGGTTGAACGGAGGAAGTGCAGGAACAAAGATTTA
TTTCCCTGTAATCAGTGGGCACTTCTTGGGTTGCGAATTTGTAGTGTCAAGAGTTTGATC
CCTACCAAATGGGAGGAGGCTGGAGCTGGCACTGCTGGTGATTCCTGGAAGTGAAATTTT
GCATTCAAGCGTTAGTTTTAGACAGAGCCTGGTTTCCCAACCAGGTTTGGTGCTATACAC
ACTGCATTCCAAATGCGTCCATTAACTTGATCTTGAGTTATTTATGCAACAAATATCCTC
AAACAGAATTTCACATCCAGATTTATCTTAGACCAGCCAGCTATAGGTGGATCCCAGCAA
TACACATCTGAACTAGTATCGGTTCTGACCTTATTTTTGAGGTAGTACCATTCTGATTTG
ACACAGGCTTGAGCACCTCCGGATTTTCGTTTGTCCCTTGCGATCCACCTGGTGGAGGAA
GTTTTGTGCGGTTCTGACAGACCTTATCAATGACTCTGTGCCATTTTTTCGTTCAAACAG
AGGCTATATTCGTTTTATATTCAATTCAACAGAGTAACATTCTGCGTTGCCAGCAAACAC
AAAATTCCCGATCGCACAATATTCAGGATTATTATTACATCCCCACTGTTTGTTTGCATT
TTTTACTCCGCCATTCTGTGCAGTGCAATCTAGCATGTTTTAACTGTACACATACTTACT
CTTATTTGATTCTTCTACCTTGGCAGGCTTCATGCTCAAGCCCTTACCCTGGCTGCCCTG
GGTTGTTCCGCGCTGGTGGAGTACTATGATCACCAGTCAGGTTCAGGGTCAAAAGTTCAT
GAC



Homology of Contig U35_15480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None