barSeed - Barley Seed Development Database

Probe CUST_20945_PI390587928

Source Contig U35_15482

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20945_PI390587928	Hv_44K_v2	ACTGTTGAAATGTTTCCCTCCTGCGACTGATGAAGTAAACTACCAAGAAAGTTTCATATT	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367410	3033	2e-24	2974 - 3033	100	60 / 60	plus	ABC03253 ABC03254 ABC40732
JLOC1	JLOC1_10607.1	985	8e-25	829 - 888	100	60 / 60	plus
Harvest21	ABC03254	706	3e-25	632 - 691	100	60 / 60	plus	ABC03254
Harvest35	U35_15482	706	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_15482 706 Hv_44K_v2
GCCTCCTCCCCTCTCCCCACCCAGGCCCCTGTCGCAGAAGCACACGCGCAGACAGATTGG
AACCGGAGAGGAGAGCTCGATCTGATAGCAGAAGCTTTCGGCGGAATGGCGGAGGAGAAG
GGGACGCTGCAGGCGATGAGGGGCTGGGTCGTGGACCATAAGCTCCGGGCCGTAGGGACG
CTGTGGCTCACGGGGATCGCGGGATCGATTGCGTACAACTGGTCCAGGCCCGGCATGAAG
ACCAGCGTCAAGCTCATCCACGCCAGGCTTCATGCTCAGGCCCTTACGCTGGCTGCCTTG
GGTTGTTCCGCGCTGGTGGAGTACTATGATCACCAGTCAGGTTCAGGGTCAAAAGTTCAT
GACTATGCAAAGCAGTTCCTTCCATCGGAGAGAAACGCCAAAAAGGACTCTGTGTAGAAG
AGGCAGCAAATTATAATATAGGCTTCCATTAGCTGATATGGAATTTGTTGATGTTATTTT
CTGAGCAAACAATCTGGCATTTCACATGCCGTTATCCAAGTTCTGCAGGCTTCCTGTTCT
CTGTATAAGCTACTGAACCAGCATTTTGATGCAGCCGTATGCAAATCTGTGGTAGTGGAA
ATATGTATTTTCCTGAACCACCCATGAATGTACTGTTGAAATGTTTCCCTCCTGCGACTG
ATGAAGTAAACTACCAAGAAAGTTTCATATTAAAAAAAAAAAAAAA

Homology of Contig U35_15482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47670.1	102	1e-53	protein\|hypoxia-responsive family protein, putative, expressed
Brachypodium v1_2	Bradi1g18030.1	102	1e-57
Arabidopsis v10	None