- Probe CUST_20928_PI390587928
- Source Contig U35_23478
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20928_PI390587928 | Hv_44K_v2 | GTCCTTGTTTACGTTGTATTATCCTTCGTTAAGCGTCATTCACGTGTTTTGAATTATTTG | 384 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.394 | 5.312 | 1.409 | 0.621 | 0.261 | 0.364 |
| Raw | 114.839 | 219.775 | 51.496 | 39.113 | 2.993 | 7.378 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60245.2 | 1541 | 2e-24 | 1363 - 1422 | 100 | 60 / 60 | plus | ABC03946 ABC19680 ABC48540 |
| MLOC | MLOC_60245.1 | 1276 | 2e-24 | 1159 - 1218 | 100 | 60 / 60 | plus | ABC03946 ABC19680 ABC48540 |
| JLOC1 | JLOC1_39265.1 | 1729 | 8e-25 | 1478 - 1537 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19680 | 468 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | ABC19680 |
| Harvest35 | U35_23478 | 468 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus |
Contig Sequence (468 bp)
>U35_23478 468 Hv_44K_v2 CCGGGNCTGTAGGCAATTCGGGACGAGGGCGGAGGAGCTCAACGCGCGCAACCTGGTGTA CCTCGTCTCCAAGCGGATCCGCATGCAGGGGTTCGTCGAGCCGGACCACAAGCACCTCTA CCCGGAGTACAGGGCGTGGGTGCTGCCGCACATCAAGGACGGGAAGGTGGTGTACGTGGA GGACGTCGTGGAGGGACTCGAGGCGGCGCCCGGAGCGCTCATCGGACTCTTCCACGGACG CAACGTCGGCAAGCAGGTTGTCAAGCTCGCCAACCCTCAGTGACTCACACATCGCATCCG CATGCAGTGTCCTTGACAAGTCACCAAATAAAACGAATGGCGAGATACATGTGCATGCAT GGCGCTGGGAAGCTATCATGAGGAGTCCTTGTTTACGTTGTATTATCCTTCGTTAAGCGT CATTCACGTGTTTTGAATTATTTGTTTCTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23478 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |