barSeed - Barley Seed Development Database

Probe CUST_20919_PI390587928

Source Contig U35_47430

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20919_PI390587928	Hv_44K_v2	ACAAGTTTACGAGGGTGCTACTAGACGGCTTCAAGCCCAAGGAAGTGAAGCTGCGGGACG	227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67886.1	1316	2e-23	404 - 461	100	58 / 58	plus	ABC08003 ABC48294
JLOC1	JLOC1_44864.1	975	1e-23	280 - 337	100	58 / 58	plus
Harvest21	ABC48491	495	3e-25	228 - 287	100	60 / 60	plus
Harvest35	U35_47430	495	3e-25	228 - 287	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_47430 495 Hv_44K_v2
GGCACCAGCCTACACCCCGCTTTGCTCTCACTCGGCCAGAACCCCAAGCAGCAGTCCACC
GTCGCTCGCAGGCTGCCGCTGCCAAGAGGGCGTAAGGTCGCCACCGCCGGCTGCGCCCTA
CGACGCCCCTTCCACCAGGCAAGAGACGCGTGAGATGGACGGCTTGGAAGGTTTCGAGTT
CTTCGAGATCATCCTTGAGAACCCCTCCAGCAGGCTGAGGCTGCCTGACAAGTTTACGAG
GGTGCTACTAGACGGCTTCAAGCCCAAGGAAGTGAAGCTGCGGGACGCCGGCCACGGGCG
TCGCTTCTGGGACGTGAAGGTGGTGTTGGACGCCGACGGCCACATGTATCTAGGGCGCGG
CTGGGAGCAGTTCGCCCGTGCGCACGACCTGCGGCTCGGCTACTTCCTCGTGTTCAGCTA
CGACGGGGATGCCGTGCTCACCATCAAGGTGTTCGACATGAGCATGTGCCGCAGGCACTA
CCAGCACGACGGCGA

Homology of Contig U35_47430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None