barSeed - Barley Seed Development Database

Probe CUST_20908_PI390587928

Source Contig U35_23482

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20908_PI390587928	Hv_44K_v2	CTGCAAGCTAATTTAATTGGCTCCAATAGTCGACGTTGGTATACGTGACTATGTAAAAAA	752	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.339	1.913	1.486	1.046	0.494	1.154
Raw	6.923	76.095	47.292	53.003	8.305	21.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74954.1	1094	9e-22	138 - 192	100	55 / 55	minus	ABC19276
JLOC1	JLOC1_49971.1	922	5e-22	77 - 131	100	55 / 55	minus
Harvest21	ABC19276	823	3e-25	753 - 812	100	60 / 60	plus	ABC19276
Harvest35	U35_23482	823	3e-25	753 - 812	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_23482 823 Hv_44K_v2
TAGCCCGACGACTACTACGGCATGCAACCGCGGTTTGCTGATAGATCTCGGCGCTAAACT
GCACGCATGCGCGTCGCGCTTGCGCAACCAATTCTTTTTCTTCCCCGCCTCCACCGCTTC
CTCGGTCTTGCTGTCCGCCCTCGCCTTGCTTGTATGCGGCACTGCTTTCTCTCGAGTCGT
CGTCTTCTTCCTGCCCCTGGTGGTCTCCACCACCATCTGCTGCGCAGCGATGTACCTGCT
CGTCGCCTCGGAGTCGTCAGAGGGAGGAGCGGCGAAAGAGGTCGTGCTCCTCTGGGGCGA
CAGGGCGGAGGTCGGGCTCCTGGAGGTGTACGGCGGCGCGAACGCGAGCGCGTACGGCGA
CAGGCGCGACGTCCAGGTGGGCTGTTTCCTGCACCGCAGCCCCCCCAGCGGCGGTGGCGC
AGGGTGGAAGAAACTCTGCGTCGACGAGAACGGCGAGGAGGTGGTGTTTGCCGGCAGGGT
GGTGGTCGGCAGCAGCCTGCAGGACGGCGCGGCGCTCGAGGAGGAGCTGGTGTCTCTCCA
GGTGGACAGGTTCGCCGAGGGCGTGTGGGATCGCTACTTCGGCGGGAGCTTTGGGTGGAA
CTACGTGACCCCTGAGTCCGAGGAAATGGACCGAAGCATCGAGCAGCTAGCGTAAGTAAT
TCTGCGTCATGGCGTGTCATGTCACATGGGTTAACTAGATGTACTCTGCCAGTCTGCCGT
GCATGTTGCCAAATTTGACGGCACAGTTTTTGCTGCAAGCTAATTTAATTGGCTCCAATA
GTCGACGTTGGTATACGTGACTATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14640.1	213	4e-56	protein\|expressed protein
Brachypodium v1_2	Bradi2g08737.1	227	6e-61
Arabidopsis v10	None