barSeed - Barley Seed Development Database

Probe CUST_20903_PI390587928

Source Contig U35_23488

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20903_PI390587928	Hv_44K_v2	GCTAAGTTCTGATCCCAATTCAGGTGCTTGCGTGTATCTTGCCTTCATATTTAAATCTAA	1246	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.531	1.731	1.322	0.880	0.443	0.422
Raw	189.626	345.844	224.159	229.991	40.522	43.319

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59501.4	1895	7e-23	90 - 150	98	60 / 61	minus	ABC20402
Harvest21	ABC20402	1311	3e-25	1247 - 1306	100	60 / 60	plus	ABC20402
Harvest35	U35_23488	1311	3e-25	1247 - 1306	100	60 / 60	plus

Contig Sequence (1311 bp)

>U35_23488 1311 Hv_44K_v2
GGGGGTATTGAGCCTGATGTTGTGATGTACACTGCTTTGATCGATAGCCTGTGTAGACAC
GGGAAGGTGAAAAAAGCAGCACGGGTGATGGACATGATGACGGAGCGGGGGTTGGAGCCA
AACGTGGTGACCTACAATGTGCTGATCAATTCCATGTGCAAGGAAGGGTCTGTGAGGGAG
GCACTCGATTTGCGGAAGAATATGTCGGAGAAGGGCGTGCAACCAGATGTTGTGACATAC
AACACACTCATCACAGGGCTATCTAGTGTGCTCGAGATGGATGAGGCGATGGCGTTGTTA
GAGGAGATGATGCAAGGTGAAACTAGAGTTAGGCCTGATTTGATGACATTCAACTCGGTT
ATACATGGACTTTGTAAGATTGGTTGGATGCGGCAAGCACTCCAGGTCCGGGCCATGATG
GCTGAGAATGGATGCAGGTGTAACTTGGTGACATTTAATCTGCTGATTGGTGGGCTCCTT
AGAGTCCACAAGGTAAAGAAGGCGATGGAACTGATGGATGAGATGGCTAGTTCTGGGCTA
CAGCCTGATTCGTTCACCTATAGCATATTGATAAATGGCTTCTGTAAAATGCGGCAAGTT
GAACGTGCGGAAAGCTACTTGTCTGAAATGAGACATCAAGGGATGGAGCCTGAGCCAGTT
CACTATATTCCTTTGCTTAAAGCTATGTGTGATCAAGGCATGATGGGACAGGCCAGGGAT
TTGTTCAATGAAATGGATAGGAACTGCAAATTAGATGCTGCTGCTTATAGCACTATGATC
CATGGTGCTTTCAAATCAGGGGAGAAGAAAATTGCGGAAGAGTTTCTTAAAGATATGATT
GATGAGGGGCTGATTCCTGATGCTGTGACATATTCTATCCCAATCAACATGTTTGCAAAA
TCTGGAGACCTAGCAGCGGCGGAGCGTGTGCTTAAACAGATGACAGCAAGTGGCTTTGTG
CCTGACGTTGCTGTATTTGATTCACTGATCCAAGGTTATGGAGCTAAAGGCGACACCGAG
AAGGTTCTTGAGTTAACTCGTGAAATGACAGCCAAGGGTGTAGCACTTGATCCTAAAATT
ATTTCAACTATTGTCACTTCTCTTGGGGCAAGCATTGAAGGGCAAAAGTTATTGCAGAGT
TTGCCTGGTTTTGATACAGAAATATCAAAAGGCGACGTCATCTCGCCCCATGATGTAATG
AATATGCTACAAAAACATTGCACCAAACCTGAATCCCCTGCTCTTTGCTAAGTTCTGATC
CCAATTCAGGTGCTTGCGTGTATCTTGCCTTCATATTTAAATCTAANNTAT

Homology of Contig U35_23488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42880.1	625	0.0	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi1g21250.1	628	0.0
Arabidopsis v10	AT4G28010.1	704	1e-72	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:13930379-13932493 FORWARD LENGTH=704