barSeed - Barley Seed Development Database

Probe CUST_20902_PI390587928

Source Contig U35_23489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20902_PI390587928	Hv_44K_v2	AGTTTTGATACTACTGATGGTAAGGAGCAAGCTGAAACTTCTGGCTTGATGGCGGTAACG	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59198.2	2156	2e-24	1446 - 1505	100	60 / 60	minus	ABC19325
MLOC	MLOC_59198.1	2446	2e-24	1736 - 1795	100	60 / 60	minus	ABC19325
JLOC1	JLOC1_38510.3	2381	8e-25	676 - 735	100	60 / 60	plus
JLOC1	JLOC1_38510.2	2266	8e-25	615 - 674	100	60 / 60	plus
JLOC1	JLOC1_38510.1	1884	8e-25	599 - 658	100	60 / 60	plus
Harvest21	ABC19325	694	3e-25	569 - 628	100	60 / 60	plus	ABC19325
Harvest35	U35_23489	694	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_23489 694 Hv_44K_v2
CCAACACCGGCCACGCGGCGGCCGGCTCGCCGTAGCCGTCCCCTTGCGCTCGCCTTCGCC
AGCGCGGCAGCGCCGTCCGTTGCTGTCGCACCCGCCACTACCTCCCCCCCCTCTCCCTTC
CGCCTCCTCATCCGCAGACACTCGCGGCCGACACCAAACCGCGCCGCCGGCTGTTCCGCG
CTCGTCCCTTGCCGTGCATATGGACGTAGAGCGCGTGGAACTGGAAGGCCGCCGCCTCAA
GAAGAAGGGGAAGCATCGTGACAAAGAGGGGAAGGCGAAGGATAAATCGAAGCGTCGCAC
AGATGAAGAGGCCGTGGTAGGCGTGGAGGAGGAGAAAGAAGGCCACAAGCGCAAGAAAGG
GAAGGGCCGCAGTGAGGAGAATGTTCCAGTCGTTTCAGGTAGCATAGAGAACAGTGTTGG
TGAGGAGCAGGCCAATAAGTCGGGCTCGATGGCGCTGAAGCCTTGTTCGGAGGGTGCCAC
CAACAAAGACAGTGTGAAGAAAGACAAGAAGAGAAAGAAGGAGGAGAAGAGGAAAGAGAA
AGAAGCTGAGATGACAGAGCAGAAGCAGAGTTTTGATACTACTGATGGTAAGGAGCAAGC
TGAAACTTCTGGCTTGATGGCGGTAACGCCCTGTTTGGAGCGTGCCCAGGGCGATATGAG
CAAGGACAAGGTGAAGAAAGATAAAAAAAAAAAA

Homology of Contig U35_23489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None