barSeed - Barley Seed Development Database

Probe CUST_20891_PI390587928

Source Contig U35_47444

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20891_PI390587928	Hv_44K_v2	ATTCTCTCGTCTTATACTCGTCGGCCCTGAGCTCTCCACACCGTCCCCTCGGGTCGTTTC	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376906	2331	2e-24	429 - 488	100	60 / 60	plus	ABC33988
MLOC	MLOC_76536.1	2065	2e-24	116 - 175	100	60 / 60	plus	ABC33988
JLOC1	JLOC1_51033.1	1848	8e-25	123 - 182	100	60 / 60	plus
Harvest21	ABC48519	546	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_47444	546	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_47444 546 Hv_44K_v2
AGACGCGCCGCCGCAAAGCCCTCGCGACTAAACGACGGCGTTAACCCGAGCGGGTGCGTC
CAATGGCGGTGTGCACGGAGCTGAACCAGCTGCAGCACATCGAGCCCTCCCGCTTCATAT
CCTTCTCCTTCCCCAACCCTCTCCTCCACGACGCCTCCAACCCTTACGCCGACGCCGACG
CCGACGCCAGCGACCACGCGGAGCTCCTCCGGGTGGCCGTTCTCGACTCTCCTGCCGCCG
CGACGCCATCCCCGCCCGCCCCGCGGACGGCGGGGATGCTCGTCCCGGCCGGCCGGCACC
GCGACTGGATCTTCTCCACCCGCGCCGGGCAGCTCCACCTCCTCCTTTCCTCCAGATCCC
AGCGGACATTCTCTCGTCTTATACTCGTCGGCCCTGAGCTCTCCACACCGTCCCCTCGGG
TCGTTTCCTGCGCCGCCGCTCGCCCGGACCCGGATCCTGCTCGCGCGCGGCTTCTCCCCC
TCTTCCTGGCCCTCTGCCCCAGGGCTGCGTTTGGCAACGGTGCCATCCCTTACGTCCCGC
TGCTCT

Homology of Contig U35_47444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None