- Probe CUST_20886_PI390587928
- Source Contig U35_47449
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20886_PI390587928 | Hv_44K_v2 | GTTTGAGTGGATTGTCGTCGACCGATCTCATAGTTTGAACAAAAATCTAGTTTCAAAAAA | 11 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 37.070 | 9.059 | 1.447 | 0.554 | 0.302 | 0.355 |
| Raw | 11207.897 | 4527.290 | 613.787 | 362.061 | 76.345 | 94.246 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71133.1 | 1377 | 7e-23 | 1262 - 1318 | 100 | 57 / 57 | plus | ABC48529 |
| Harvest21 | ABC48529 | 402 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC48529 |
| Harvest35 | U35_47449 | 402 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (402 bp)
>U35_47449 402 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAACTAGATTTTTGTTCAAACTATGAGATCGGTCGACGACAA TCCACTCAAACAACCCCTATATAGCCTATAGTGGCTTTAAAGCACTAAGCTAGTTCCAAG CTCAAGCGACGACGGGTTTGGGCGGCAGTTCCTTGTCGGCGAGGAAGTGCGCGAAGAGCT GCCTGGCCTGCACCGGCGTGACGGTCGGGACCATGTGGCCGGCGCCGCGGATGGTGACGA TGGTGAGGCCGTTGTAGTCCACCTGGTAGCCGCCGACCTGGTCGCTGGTGAACCACTCCC TCCACTGCTTGAGGGTCTTGAGGCCGAGCTTGCGCAGCGCCTGGCGGGTGGACGAGACGG GCACGCGTGCATCCGTGTCGCCGCTGTACACCCACACACGGA
Homology of Contig U35_47449 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |