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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20878_PI390587928Hv_44K_v2TTAGGCAACGCTCTGGCATCACAGTCTGAGCTAACATTAGCGAAAGTCTTGTTATTCAAA783GeneList: cyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9411.2321.4490.7280.7230.490
Raw 24.34620.54024.67718.4716.1663.295



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC357952983e-25239 - 29810060 / 60plus
Harvest35U35_234978433e-25784 - 84310060 / 60plus



Contig Sequence (843 bp)

>U35_23497 843 Hv_44K_v2
CAAAGACGGCACCAGCTGGATGGGCCAATGGAGCATCAAAAACATCAGCAAAAGAATATC
AACCATATAATGTTATTGCTATTGGAAGTCAAGACCGGACTATCACTGTTTGGACAACAG
CAGGTGCCCGGCCATTGTTTGTTGCTAAGCATTTCTTCACTCAAAGTGTGGTTGATTTAT
CTTGGAGCCCTGATGGTTATTCACTTTTCGCCTGCTCTCTGGATGGATCGGTTGCGACCT
TTCACTTTGAAGCAAAGGAGCTCGGATACAGGCTAAGTGATTCTGAACTGGATGAATTAA
AAAGGAGTAGATATGGTGATGTCAGAGGGAGGCAATCAAATCTAGCTGAAAGCCCTGCGC
AGTTGCTGCTAGAAGAAGCATCAGTGAAGCAATTGTCTACCAAGAAGGCGACACCTATCG
TCCAACAATATCAAGCGCCCCCAAAAGTTCCTGCAGATGTACCTAACCCACCTCCTGTTG
TGGAGAGTCAGAAAGCTCCTGAAACTCTACCTGAAGGCGAAAAGAAAACAGCAGGTCAAG
CGGCTGATGACACCTCTAAAGTTACTCGGGTATCTAGTCCAGTAAAACAAAGGGAATACC
GGCGTCCTGATGGTCGGTAAAGAATAATTCCAGAGGCTGTGGGATTTACTTTTAACCAGG
AAAACCTGAGCAATCGTTCTCAGAATCAAGCTGTTGATTTTTCATTCCTAGATCAGCGAA
TGCGCCCTGGAGAGAATGGAATAAGATCATACTACAGTTCCGGTAACTGTAACAATTGTG
GAGTTAGGCAACGCTCTGGCATCACAGTCTGAGCTAACATTAGCGAAAGTCTTGTTATTC
AAA



Homology of Contig U35_23497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g39420.19762e-137protein|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2Bradi4g38470.28302e-154
Arabidopsis v10AT3G44530.110585e-82| Symbols: HIRA | homolog of histone chaperone HIRA | chr3:16116026-16121247 FORWARD LENGTH=1058