barSeed - Barley Seed Development Database

Probe CUST_20868_PI390587928

Source Contig U35_35477

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20868_PI390587928	Hv_44K_v2	GTACGAATTAATAATTAAAGTTGATCGCAGGCTTGCAGCCTTGACATGTTGATCTTAAAA	339	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36459.3	541	3e-22	421 - 476	100	56 / 56	plus	ABC36625
MLOC	MLOC_36459.1	1186	3e-22	652 - 707	100	56 / 56	plus	ABC26057 ABC36625
JLOC1	JLOC1_23474.2	685	1e-22	579 - 634	100	56 / 56	plus
JLOC1	JLOC1_23474.1	693	1e-22	587 - 642	100	56 / 56	plus
Harvest21	ABC36625	466	1e-23	14 - 74	98	60 / 61	minus	ABC36625
Harvest21	ABC04420	610	1e-23	536 - 596	98	60 / 61	plus
Harvest21	ABC04421	672	2e-22	572 - 629	98	58 / 59	plus
Harvest35	U35_35477	412	3e-25	340 - 399	100	60 / 60	plus
Harvest35	U35_1518	564	5e-23	488 - 543	100	56 / 56	plus
Harvest35	U35_1517	540	5e-23	429 - 484	100	56 / 56	plus

Contig Sequence (412 bp)

>U35_35477 412 Hv_44K_v2
TCTGATCAGTCGAGCGAGGGGTCAGTTCAACAGGCAGAAGAGCTCCGGACGACTCCGGCG
AAGGCGTCGGCCGGAGCTGGTGGGAGCCATCGAGGAGGCGAAGAATCATCAGAAGGACAG
GTCAGACGGAAGATCATCGAGGTCTTCCCAGTCGGCACCGCGGTCACCGAGGACTGAGGT
TCGACCGGTCCGCATCTTCGTCAACACAGTTGCGGAGATCCCCCGCATGGCTAGCTTCGC
TTCTGCTCGATTCGGTGACGTGGTTGTGTTTGGTTGTTATATTCCGGAATAAACCATAGC
TGGATGTATGCATAATACTCCAGCTATGTCGATCGCCAGGTACGAATTAATAATTAAAGT
TGATCGCAGGCTTGCAGCCTTGACATGTTGATCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_35477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None