barSeed - Barley Seed Development Database

Probe CUST_20865_PI390587928

Source Contig U35_47450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20865_PI390587928	Hv_44K_v2	AAATCTGCTCTTCTTGGAGCAACCTGCCGGCGTCGGATTCTCTTACACGAACACCACCGC	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71133.1	1377	2e-24	110 - 169	100	60 / 60	plus	ABC48529
Harvest21	ABC48530	605	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_47450	605	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_47450 605 Hv_44K_v2
CTTTGATATCGATCTACGTGGAGTAGCCACGATGTCGAGGGCGACGGCGGTCGTCCTCCT
GCTTGCTGTCGCGTTCGTGTGGACGACGACGACCGTGGCGGCGGCGAGGCACCACCGCCA
CCACCATGACGGGTTTGCAAAGGTGTTCGACCGGCAGCAGGCGGACCTGGTGCAAGCGCT
GCCGGGCCAGCCGGCGGGGCTCGGCGTCCGGCAGTTCTCCGGGTACGTGACTGTGAACCA
GACGCACGGCCGCGCCCTCTTCTACTGGTTCTTCGAGGCCACCCACGACGTCAGCAACAA
GCCCCTCGTCCTCTGGCTCAACGGAGGGCCTGGATGCTCGTCGCTTGGATACGGAGCATT
GGAAGAGCTGGGGCCCTTGCTGATCCAGAAGGGAACCCCTGAGCTCAGGCTCAACCCCGA
CGCATGGAACAAAGAGGCAAATCTGCTCTTCTTGGAGCAACCTGCCGGCGTCGGATTCTC
TTACACGAACACCACCGCCGATCTCGAGAGATTCGGCGACGACCTCGCTGCTCATGACGC
CTACACGTTCCTCGTCAACTGGTTCGAGAGGTTCCCGCAGTTCAAGGGCCACGATTTCTA
CATCG

Homology of Contig U35_47450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51370.1	501	2e-83	protein\|OsSCP38 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi1g35860.1	507	1e-98
Arabidopsis v10	AT5G23210.1	499	2e-69	\| Symbols: SCPL34 \| serine carboxypeptidase-like 34 \| chr5:7810892-7814837 FORWARD LENGTH=499