- Probe CUST_20864_PI390587928
- Source Contig U35_47451
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_20864_PI390587928 | Hv_44K_v2 | GTTGTATGGGGTTTGTTTGTTCACTGAAGAAATATCAAAAGAAATTGAGAATTTCCCCCA | 16 | GeneList: green MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.273 | 1.420 | 1.335 | 0.948 | 0.436 | 0.424 |
Raw | 218.058 | 379.068 | 312.108 | 338.394 | 56.469 | 58.211 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC48534 | 291 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus | ABC48534 |
Harvest35 | U35_47451 | 291 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus |
Contig Sequence (291 bp)
>U35_47451 291 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGGGAAATTCTCAATTTCTTTTGATATTTCTTCAGTGAACAA ACAAACCCCATACAACAACACATCGAGCAATATGGAAAACCATTCCTGAATAGTAGAAAA AGGAAGAAGCGTTGGTCTACTGTTACATGCTCATATTTGCAACTACCAAGAGAAAAATAA ATTGACTTGCAGTCAGCTGATCCTTTCGTGGGGTTCGGTGACTAATGGAGGCAGTCATGT ACAATGGCACCGAAGTGGGATCGATGCGCCTTCTGGCTTCCGCTTCTCCCG
Homology of Contig U35_47451 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |