- Probe CUST_20850_PI390587928
- Source Contig U35_47463
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20850_PI390587928 | Hv_44K_v2 | ATATTCTGGATGGGAGTAACAGTGATCATGAGAGTAACGGTTCACCGAAAACTTCTAGGA | 513 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.717 | 0.779 | 1.475 | 1.462 | 0.999 | 0.983 |
| Raw | 190.865 | 310.747 | 541.327 | 773.590 | 201.980 | 218.792 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365864 | 3794 | 2e-24 | 455 - 514 | 100 | 60 / 60 | plus | ABC07103 |
| MLOC | MLOC_72867.4 | 1342 | 2e-24 | 646 - 705 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_72867.2 | 1383 | 2e-24 | 781 - 840 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_72867.3 | 1371 | 2e-24 | 769 - 828 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_72867.1 | 1455 | 2e-24 | 781 - 840 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_48493.3 | 1485 | 8e-25 | 544 - 603 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48493.2 | 1416 | 8e-25 | 463 - 522 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48493.1 | 1536 | 8e-25 | 595 - 654 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16575 | 1033 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47463 | 581 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_4970 | 979 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus |
Contig Sequence (581 bp)
>U35_47463 581 Hv_44K_v2 TACAGATCGAGCAGTTTGCCCTCTCCTGAAGGCACATCGCCGGAGTAAGGAGTGGCGCAG GGGCCGACCGGCAACCCGAGCAGCGCCAGCCCATGCTCCTAACGCCGATTCCCCCCTGCT GCCCTCCTCTCTCCCAGATCCAGATCCAGATCCAGATCCAGGCAGTTCTGTGACTTTCAA TGTCTTCCACAAGAAAAGTGAGAAATGTTAACAAGCGCTATGCCAAAATTAATGAAGATT GGCCAGAAAAGGATGCAACGGTTGTACATAAAAATAAAGTGCGAAAGAAAAAATTATCCG ACCTTGGTTCTCAGTGGAGCAAAGATGAGTTGGAGCACTTCTATGGAGCTTATAGAAAAT ATGGAAAAGATTGGAGGAAGGTGGCTGGTGCGGTCCATGATAGAACATCTGATATGGTGG AGGCTCTTTACAACATGAATAGGGCATATTTATCTCTTCCAGAGGGAACTGCTACGGCTG CAGGGTTGATAGCGATGATGACCGATCACTATAATATTCTGGATGGGAGTAACAGTGATC ATGAGAGTAACGGTTCACCGAAAACTTCTAGGAAGCCACAG
Homology of Contig U35_47463 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g43800.2 | 1247 | 2e-72 | protein|DIRP family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g01340.2 | 1159 | 1e-80 | |
| Arabidopsis v10 | None |