barSeed - Barley Seed Development Database

Probe CUST_20849_PI390587928

Source Contig U35_47464

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20849_PI390587928	Hv_44K_v2	GGATTGTATTTGTATGAACCACTGGGATGTTCGATGAATGAACTGCTTCTCTTTATTAAA	457	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	19.229	12.046	2.018	0.599	0.646	0.565
Raw	207.009	220.534	29.794	13.518	3.717	3.549

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45570.1	1286	1e-23	1217 - 1274	100	58 / 58	plus
Harvest35	U35_47464	526	3e-25	458 - 517	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_47464 526 Hv_44K_v2
CGGGAGCGGAAGCAGCAGCGACGACGGCATTGAAGGCGGCGGCGGCGGCGGCGGCGCTAG
GTTCATCGTGACGCTGGGACAGTGCCACCTGGGCACAAAGAAGAAGCAGTACCTGAACGT
GCCTGTGGAGTTCAGCGAGGCACACGGGTTCACGGAGAAGAGCAGGGTGGTGCTGCGGAT
GCGCGGGCAGCAGTGGACCGTCTGCCTCAAGCACAGCAACCGGCGGAAGGCCAACGCGAG
GACCCGCACGGCGTTGAAGTACGGCTGGAACCAGTTCCGCGTCGACAACGGCCTCCGCGT
CGGCGACATCTGCTTCTTCCAGCTGGTGCAGGAGGCCGCCGGCGGCGACGACCCGGTGCT
GAGCGTCGAGGTGCGCAAGATGGACGGCACCACCGTCCAGTGATCGACTACTGGTTCGTG
TGTGTGCCTTGGTGTGATGGCAAATAAGCTGAGGAATGGATTGTATTTGTATGAACCACT
GGGATGTTCGATGAATGAACTGCTTCTCTTTATTAAAAAAAAAAAA

Homology of Contig U35_47464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None