barSeed - Barley Seed Development Database

Probe CUST_20828_PI390587928

Source Contig U35_47482

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20828_PI390587928	Hv_44K_v2	ATTCGGCAGTTCGATCTATGATTTCACATTCATGGACGTTGATAAGATCTTTCCATTTAG	630	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.590	2.243	1.038	0.728	0.544	0.324
Raw	4906.917	3380.197	1519.640	1574.706	436.419	291.832

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC53034	445	3e-25	83 - 142	100	60 / 60	minus
Harvest21	ABC48586	693	3e-25	631 - 690	100	60 / 60	plus
Harvest35	U35_47482	693	3e-25	631 - 690	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_47482 693 Hv_44K_v2
GGAAGAGGATCAAGTTGGCCCTTGCGAATAACTTGATGCACTATCTCCCTTCAACCCTTT
GAGCGAAATGTAGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGT
AGGAACTACGAGATCACCCCAAGGACGCCTTCGGCGTCCAGGGGTCACGGACCGACCATA
GACCCTGTTCAATAAGTGGAACACATTAGCCGTCCGCTCTCCGGTTGGGCAGTAAGGGTC
GGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGTTTAAGATCAAAGAGTCG
GGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAACTGGATTCCCCGGAACC
ACAAGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGAAGA
GTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTAT
TGTCTATCGTTGGCCTCTATGGTAGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTAC
CCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAGCCCGTGAACTTAGCGGATA
CTATGATAGCGATAGCACCGAATTTTGCCAATTCGGCAGTTCGATCTATGATTTCACATT
CATGGACGTTGATAAGATCTTTCCATTTAGTAG

Homology of Contig U35_47482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None