- Probe CUST_20825_PI390587928
- Source Contig U35_47485
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20825_PI390587928 | Hv_44K_v2 | CATCTGGTTTTGTGTACTCCAAATCACTAAAAATCTCGAAGGGCATAAAGATTCCATCTG | 514 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.415 | 1.375 | 1.368 | 0.603 | 0.271 | 0.318 |
| Raw | 61.145 | 85.758 | 79.686 | 54.873 | 8.725 | 10.968 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61815.2 | 2677 | 2e-24 | 1031 - 1090 | 100 | 60 / 60 | minus | ABC43067 |
| MLOC | MLOC_61815.3 | 2232 | 2e-24 | 892 - 951 | 100 | 60 / 60 | minus | ABC43067 |
| MLOC | MLOC_61815.1 | 2543 | 2e-24 | 1042 - 1101 | 100 | 60 / 60 | minus | ABC43067 |
| JLOC1 | JLOC1_40417.2 | 2665 | 8e-25 | 1410 - 1469 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40417.1 | 2558 | 8e-25 | 1303 - 1362 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48592 | 577 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47485 | 577 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus |
Contig Sequence (577 bp)
>U35_47485 577 Hv_44K_v2 GGGAAGGAGTACGAGAACTTTACTTTCCCCATGGCAACTTGTATCGTCATGTCAGGGATA TATGAAGATGATCTGGACAAGGCTAATGAAATTATTTATACCGGTCAAGGAGGAAATGAT TTACTCGGTAACCATCGCCAAATTGGTTCTCAACAACTGAGCCGTGGAAATTTGGCATTG AAGAATAGCAAGGATAATGGCAATCTGATACGAGTTATTAGAGGTCATGTGGATAAGACT ACCTACACTGGCAAAATCTACACATATGATGGCTTGTACAAGGTTGTAGATGACTGGGTA CAGAAGGGAGTACAAGGACATGTTGTATACAAGTATAAATTGAAGAGGCTTGAGGGTCAG CCGTCGTTGACAACCACTGAGGTGCGATTCACTCGTGCGGAAGCTCCCAGAAAGATTTCT GAATTACCTGGGTTGGTTTGTGATGACATCTCTGGAGGACAGGAGAACATTCCAATTCCT GCTACTAATGTGGTCGACGACCCACCTGTTCCTCCATCTGGTTTTGTGTACTCCAAATCA CTAAAAATCTCGAAGGGCATAAAGATTCCATCTGATT
Homology of Contig U35_47485 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g70220.1 | 664 | 2e-109 | protein|histone-lysine N-methyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi2g59430.1 | 690 | 3e-107 | |
| Arabidopsis v10 | AT5G13960.1 | 624 | 6e-64 | | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4 | chr5:4501688-4505979 FORWARD LENGTH=624 |