- Probe CUST_20822_PI390587928
- Source Contig U35_47490
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20822_PI390587928 | Hv_44K_v2 | GAAAAAACCAGAAGCCAAGAAATGGATGACGAAGACCATTGACCATTACGATAGGTTATT | 368 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.072 | 0.855 | 1.285 | 1.058 | 0.912 | 0.870 |
| Raw | 159.257 | 179.427 | 257.829 | 282.579 | 100.981 | 105.529 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52950.2 | 3183 | 2e-24 | 918 - 977 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_52950.1 | 3251 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_33974.1 | 3280 | 8e-25 | 941 - 1000 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48602 | 431 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47490 | 431 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus |
Contig Sequence (431 bp)
>U35_47490 431 Hv_44K_v2 GCCACGAACCAGTTCGGCTCCGGCGGCAGCAATGGAGGGTCTGCCTCCAGGCCGCACGGC AGGGATATTGTGGTTTGGACCGAAGAGATGAATGAGTATCTCATCGACTCGCTCCTGCAC CAGCAGGATATCGGGAAAAGGAGCGCCGAGGGCAGGTTCATGACCGTCGCTTATGAGAGC GTCATCACCGGGGTCGGCGAGAGGTTCGGGGTGGGGATCGACAGGTCCAACATCAAGAAC CGTCTCAAGCATGTCAAGGACATGTTCCATGAATGCGAGAACCTTTTCGACAAGGAGAGC GGGATTAAATGGAACCCGGCAACCCGGAGGTTCCACGCCGACCCTCAAGTCTGGAGGGAA TTGATTGAGAAAAAACCAGAAGCCAAGAAATGGATGACGAAGACCATTGACCATTACGAT AGGTTATTGGA
Homology of Contig U35_47490 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g53590.2 | 736 | 5e-56 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g08780.1 | 712 | 3e-62 | |
| Arabidopsis v10 | None |