barSeed - Barley Seed Development Database

Probe CUST_2081_PI390587928

Source Contig U35_18413

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2081_PI390587928	Hv_44K_v2	TAAAATCTGGCTCACTCAAATAGCTCTATGTAGAACGCACGACTGAGCAAATACAGACTG	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7609.1	790	7e-23	39 - 95	100	57 / 57	minus	ABC09922 ABC09923 ABC14625 ABC22075
JLOC1	JLOC1_5029.1	734	4e-23	39 - 95	100	57 / 57	minus
Harvest35	U35_18413	582	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (582 bp)

>U35_18413 582 Hv_44K_v2
CACACACACACACAATGAGGGAGAAGGCAAGAAGCAACACAGAAAGAAGAGCCATGGAGC
ACTCCTACAGCAACAGCGGCGTTGGCATCAGCAACTACGGCAGCTCAAAGGAGAGGAGGC
CACCGCTGAAGAGGGGGCAGCTGAAGCGGCAGATCGTGAGGACCATCAGCAACCTCATGG
CGCCGAGGAACGACGGCGCGGGCGCGGATAAGAGGGCGTCGGCTCGCACCAGCTTCGGCA
CCTACAACTGAAGCTCGAGACGGCGCCGAGTGTCGGATACGATCACTCGCACGGACGCCT
CTTGCTTCAGACCTGATTAGCTTTTTAGTACTGCGTACTTGGTAGCTGGGAGACTGTTCC
ATATATAGTGGTTCTTCTTCCTCGGTGTTCTCCGACTGTACAGAGTCCCCCGATAGTCCG
ATTGTACAGATGGATAGAGAGGTTATGTTGATTTTCGTATGTGATATACTCACCTGCAGT
TGCAGACTTGCAGTACTCCTGTTTTCTTCACAAAAAAACGCTAAAATCTGGCTCACTCAA
ATAGCTCTATGTAGAACGCACGACTGAGCAAATACAGACTGA

Homology of Contig U35_18413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None