barSeed - Barley Seed Development Database

Probe CUST_20815_PI390587928

Source Contig U35_47499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20815_PI390587928	Hv_44K_v2	CTTCGATGAGTGGGCTCTACCTGCCAAAGAATTTGATGGATTATGGGAAAGCTTACTATA	518	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.365	1.222	1.084	0.890	0.432	0.421
Raw	70.362	90.571	78.705	95.425	17.158	18.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81925.3	460	2e-24	77 - 136	100	60 / 60	minus	None
MLOC	MLOC_81925.2	587	2e-24	85 - 144	100	60 / 60	minus	None
MLOC	MLOC_81925.1	754	2e-24	88 - 147	100	60 / 60	minus	None
JLOC1	JLOC1_54489.1	871	8e-25	581 - 640	100	60 / 60	plus
Harvest21	ABC48611	581	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_47499	581	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_47499 581 Hv_44K_v2
GACCTTTTCCATTCCGCTGCCTCGCGGAGCCTGGCCACCATGAGCGCCCCCATGGAGATC
TCCTTCGACCCCCACCCTTCTCATCCCGCCCTGCCCGCCTTCCCCTCCAGCCCACCCCTG
GAGCCTGCAGCCGCCGCCACCCCTCCCGCGGCCCCGTCCTCGTCGCAGCCGACGGCGGAG
GCCGTATCTGCGCCCACCCCGCCAGACGACAAGGTCCTCGTGTCAGTTGAGGTGCTGCTG
CACGCCTCGAGTACGGCTCGCGCCGAGGACGTCCGAGCAGCGGTGGAGAGGATGTTAGAA
TCTCGAAGTTTAAGCTATGTTGATGGTCCTGTCCAGATACCTCCTGACAATTCATTTCTT
GTCGAACATGTTAAAAGGATCCAAATATGTGACACTGATGAGCTGATTGAGAACCACAAA
ATCCTGTTGTTTTGGCAAGTCAAACCTGACGTTCATGTGTTCCGGTTGAATGAAGATGGT
CCAGGTGAAGAACCAAGTGAAGATGACACTCTCTCTAGCTTCGATGAGTGGGCTCTACCT
GCCAAAGAATTTGATGGATTATGGGAAAGCTTACTATATGA

Homology of Contig U35_47499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g13467.1	477	2e-53
Arabidopsis v10	None