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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20808_PI390587928Hv_44K_v2GTTGGTACAACTTTGTATATCGATTGGAGGGAGTAATAAATTCCCTTCCCTTTATTACAA695GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3672.1701.2450.8000.3600.363
Raw 686.7501714.651844.964848.984135.802149.090



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_38535.243287e-232401 - 245710057 / 57plus ABC02943 ABC02946 ABC16607
MLOCMLOC_38535.425907e-232368 - 242410057 / 57plus ABC16607
MLOCAK35673723913e-222336 - 239110056 / 56plus ABC16607
Harvest35U35_64067753e-25696 - 75510060 / 60plus



Contig Sequence (775 bp)

>U35_6406 775 Hv_44K_v2
CACTACTCACTGCCGAAATGGTTATTATGATAATCTCATATTTCATCGCGTAATTAAAGG
ATTCATGGTCCAGACTGGGGACCCTTTGGGTGATGGTACTGGTGGGCAATCAATCTGGGG
TAGGGAGTTTGAAGATGAATTTCACAAAAGCTTGAGACATGACAGGCCGTTTACACTTTC
AATGGCTAATGCGGGACCAAATACTAATGGCTCTCAATTCTTTATCACCACTGTGGCAAC
TCCATGGCTAGATAACAAACATACAGTGTTTGGTAGAGTTGTGAAAGGCATGGATGTTGT
TCAGCAAATTGAGAAGGTCAAGACCGACAAAAATGACAAGCCGTATCAGGATGTGAAGAT
CTTGAATGTTACAGTTCCCAGGACATAAGCTCCCGTTTAATCAATTGGGTTGCTACATTA
CGGGCTGTATGATGATTTGCTGAGCTGTTTTAAGATAAATGCGGCCTCCTCAATTCTCCA
AGAAGAGGTGTTGTTTCTGGGGTAATGTGTGTAGTAGGAAAGCAATAGAAGGGAAAACAC
ATCTTTGGCTGTGGACAGAATTATTTCTCAAAGTTAGTAGGGGAAAGCTAACAGATGTTT
ACAATTTGTTCACGGGTTAAGCTTGCAACTTGATGAGAATGGTTAGTGCAAAATGTTTGA
TACAACTCCTTGTGATCCATATTAACTGTCGTTGAGTTGGTACAACTTTGTATATCGATT
GGAGGGAGTAATAAATTCCCTTCCCTTTATTACAAANNAAAAAAAAAAAAAAAAA



Homology of Contig U35_6406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g44330.25141e-86protein|peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed
Brachypodium v1_2Bradi3g42750.36539e-86
Arabidopsis v10AT3G44600.16316e-82| Symbols: CYP71 | cyclophilin71 | chr3:16165368-16169201 REVERSE LENGTH=631