barSeed - Barley Seed Development Database

Probe CUST_20805_PI390587928

Source Contig U35_6409

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20805_PI390587928	Hv_44K_v2	GGATACAAGATGATACCCGCTATGTTACCGTGGGAATTAATTTTAGTATGTCTTAATAAG	1276	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.484	0.404	0.394	1.983	2.458	3.163
Raw	2.721	2.671	4.789	43.783	20.366	28.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51408.1	1763	8e-25	1608 - 1667	100	60 / 60	plus
Harvest21	ABC13982	1371	3e-25	36 - 95	100	60 / 60	minus	ABC13982
Harvest35	U35_6409	1371	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1371 bp)

>U35_6409 1371 Hv_44K_v2
GCACGCGCTCGTGCTCGCCGCGCTGCCGGAGGGCGTCGAGGCGCTGCGCGGCATCCACCT
GGCGTCCATCCCGGACGGGCTGGCCGACGACGAGGACCGCAAGGACCTCAACAAGCTCGT
CGACGCCTACCCGCGCCACATGCCGGCCTACCTGGAGGCGCTGATCGGCGACATGGAGGC
GGCCGGGAGGCGCAGGGTGAAGTGGCTCATCGCTGACTTCAACATGGGCTGGTCGTTGGA
GGTTGCCAAGAAACTCGGCATCCGGTGCGCCTCCTTCTGGCCGGCGTCCGCTGCGTGCCT
CGCCATCATGCTCAACATCCCCAAGCTGATACAAGACGGCGTCCTCAACGACAAGGGATG
GCCGGATCGGGAGGAGACGCTGCAGCTCGCTCCGGGGATGCCGCCGCTCCACACGTCGCT
GCTGCCGTGGAACAGCGCCGGCGCCCCCGACGGACAGCACATCATCTTCCAGCTCGTGTG
CCGGAACAACAAGTTCAACGATCACGCCGAGATGACCGTCTGCAACTCGTTCCACGAGGC
CGAGGCCGGCGCGTTCAAGCTGTTCCCCAACATCCTACCCATCGGGCCGCTCTTCGCGGA
CCAGAGGTCCGTCGGCAGCTTCTTGCCGGAGGACACGAGCTGCCTCAAATGGCTGGACGC
GTGGCCCGACGGCTCCGTCGTGTACGTGGCGTTCGGGAGCATGGCCATCTTCGACTCACG
CCAGTTCCAGGAGCTGGCGGAGGGGCTGCAGCTCACCGGCCGGCCGTTCCTGTGGGTCGT
GCGCCCTGACTTCACCGCCGGCCTGAGCAAGGAATGGCTCGAAGAGTTCCAGAAACACGT
CGCCGGCACAGGCATGATCGTCAGCTGGTGCTCCCAGCAGCAGGTCCTGGCGCACCGCTC
GGTGGCATGCTTCGTGTCGCACTGCGGGTGGAACTCGACAATGGAGGTGGTGAGAAATGG
CGTGCCGGTCGTGTGCTGGCCCTACTTCTGCGACCAGTTCCTGGATCGCAGCTACGTCAC
CGACGTGTGGAGGACCGGCCTCGCCGTGTCCACCGGCGAGGATGGTGTTGTGACGAAAGA
GGAGGTGAGGTGCAAGGTGGAAAGTGTCGTCGGCGATGCCGAATTCAGGAACAGGGCACG
GTGGCTCAAGGATAACGCCTGGAGGTGTATCGGCGAGGGCGGCTCATCGCACGAGAATTT
CACCAGATTTGTGGATCTCCTAAGCGAATGAACAAAAAAAACATCTCCTGTATGCGTGTA
CTTAGTTTGCTACTCCGGATACAAGATGATACCCGCTATGTTACCGTGGGAATTAATTTT
AGTATGTCTTAATAAGATTATTTACCATACAAAAAAAGTGTCTTAATAAGA

Homology of Contig U35_6409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55010.1	463	0.0	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08190.1	455	0.0
Arabidopsis v10	AT3G02100.1	464	8e-97	UDP-Glycosyltransferase superfamily protein \| chr3:368840-370484 REVERSE LENGTH=464