barSeed - Barley Seed Development Database

Probe CUST_20804_PI390587928

Source Contig U35_6410

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20804_PI390587928	Hv_44K_v2	GCCACAGCTGTACCTGTATGTGTCTGTTTCTGTGTCTGACTATTTGTTTTTCATTTTTGT	701	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363883	3794	7e-23	3682 - 3741	98	59 / 60	plus	ABC35484
MLOC	MLOC_54494.1	3728	7e-23	92 - 151	98	59 / 60	minus	ABC35484
MLOC	MLOC_54494.2	3725	7e-23	92 - 151	98	59 / 60	minus	ABC35484
JLOC1	JLOC1_35078.2	3697	4e-23	3580 - 3639	98	59 / 60	plus
JLOC1	JLOC1_35078.1	3693	4e-23	3576 - 3635	98	59 / 60	plus
Harvest21	ABC35484	513	3e-25	383 - 442	100	60 / 60	plus	ABC35484
Harvest21	ABC49553	433	1e-23	46 - 105	98	59 / 60	minus
Harvest35	U35_6410	833	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (833 bp)

>U35_6410 833 Hv_44K_v2
ATCCCCGACGTTCTTTCCCACCTAATATGAATCCTATGCAACACACACTAAATGCTCCAG
GGGCCCCTCATGTAGATCCTGCTGCCCATCATCTTATGCTGCAGCGCATGAGTGGAAGTT
TTCCAGCAGAAGGCTTGCCAAGAGGTGTTCTGCCATCTCAGCCTGTGCATCAGGCGGCTG
GTTATAGACCTGAGATGAACAATGTAAATAATTTCCATATGCACCCTCGCCAGCCCAGCT
ATGGAGACTTTGGGTTGATGCCGCCAGGTCCATCGGGTCCAGAGGTGCGAGGCAACCACC
CAGACGCCTTTGAGAGGTTGATGCAGATGGAGCTGACAGCCAGATCAAAGCAGATGCACC
CAGCCATGGCCGGCCCTGTACCTGGTGGAGGCGGCATGTATGGGCCCGAGCTCGACCTGA
ACCTGAGATACAGATGAAGAAGGGCTCTGTTGTAGCTGTTGTCGCCATACCCTATCACCC
AAACAAACCACCATGTTCTGTGTCCATGGACGAACTTGCGTTAGCGTTTGCGGTTGCTAC
AAGATAAGATAGCTCGTCGAGGGAGGAAGTTTCGCTGGTGCCGGTGTGTGCCATGTATGT
AGTACTTTGTGTCTGAAATGGTTAGATGGGTTGCTGATGCCTGATGATCTGGTGAGGAGG
GAGGGATGGAGGAGGATACATTGGGTGCTGTCATTGTAGCAGCCACAGCTGTACCTGTAT
GTGTCTGTTTCTGTGTCTGACTATTTGTTTTTCATTTTTGTATAAATACTAAAAAAAAGG
TACCAGATTAACAATAACATATTTGCATTTGGTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01680.1	1019	4e-58	protein\|expressed protein
Brachypodium v1_2	Bradi1g52110.1	1001	6e-70
Arabidopsis v10	None