barSeed - Barley Seed Development Database

Probe CUST_207_PI390587928

Source Contig U35_19578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_207_PI390587928	Hv_44K_v2	CCATGTATATCTCTCTCTGGCTGCCCTTCTTTCATGGAAAGTTCATCTTGATTCTTCAAA	1359	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.150	1.708	1.563	1.450	0.685	0.542
Raw	273.320	659.220	516.095	738.716	124.199	106.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36389.1	1411	7e-23	3 - 59	100	57 / 57	minus	ABC10757 ABC10758
MLOC	MLOC_36389.2	1408	7e-23	3 - 59	100	57 / 57	minus	ABC10757 ABC10758
JLOC1	JLOC1_23420.2	1498	4e-23	1355 - 1411	100	57 / 57	plus
JLOC1	JLOC1_23420.1	1456	4e-23	1313 - 1369	100	57 / 57	plus
Harvest21	ABC10757	766	3e-25	15 - 74	100	60 / 60	minus	ABC10757
Harvest35	U35_19578	1433	3e-25	1360 - 1419	100	60 / 60	plus

Contig Sequence (1433 bp)

>U35_19578 1433 Hv_44K_v2
TGCAGNAATTCTGCACGAGGGGGCCATGCTGTACGAAAGCAAGCAGCAGAAACACTTCAG
TGCATGCAATCACTAGTAAAGGCTCAAGCTCGTGTCAGAGCAAGACAGGTTCGTATTGGT
TTGGAAGGTCAGGTGACCCAGAAGAAGGCTCCTGAACAAAATGCTCACGATGATCATGCT
CGAGAAATTGAGGAACGCTGGTGTGGCAGTATTGGCTCAGCGGAAGATATGCAAGCTAAA
GTATTGAAAAAGCAAGAAGCTGCTGCTAAGCGGGAAAGAGCAATGGCATATGCTTTAACA
CACCAGCGGCAGGCAGGTTCCAGGAAACTGAAAGCTGCAGATGTCCCAGGGCCAGAGGCG
GATGAGAACCAGTGGGGGCGGAACTGGGTAGAGAGGTGGGTGGCTGTACGCCCGTGGGAG
AACAGGTTACTGGACAGTAATGCCAAAGAGAGTGTACCAATTGGCGATGATAAGGAGGCT
GAGGAAAATGGGGACAGGGATGTAAACAATCCAAAAGGAAAAGTTGCAGTTTCGGGCATT
CAGTCAAATGGTTCAAGCCAGACGAAAGATGCAAAACACAAGAAGTCACATTCTGATGCA
AGTGGTTCTTCATCGGGGCAATCTGCGGCTGCACCACCCACCGCTTCTTTGGGTTCATCC
AAGCTGAAACCGAAGCCATCGGATCAAACCTCTGAGGAAGTCAGCCCTCAACCTACAGAT
CCGGCTCCGCGGTCCACAAGTAATCCCAAGGAAAGGCCAGCACAAGTCAGTGCACCAACC
AAGAAGCGGCTATCCCTTCCTAACAACGCTGTCGGTGGCGCGGCAAGAAAAGGCCAGGTG
AGCAGCAGCGAGAGAACTCGGTCCGTCGGTTCCAAGAACACGGTGAAGGGTGCATCGAAG
CCTGAATCGAAGCAGCGACCGAGTCCCGGTAGCGCAACCGCGAAGCGGGTCCAGGCACAG
GCCTGATGATTCAAGCCACTCCCTCCCATTTCATTCAGAAACTTGGTCATGGCAATGCCC
ATCTGTCACGGTGTGTCGCCGCATCGTCTGTGTACATAAAACCGAGAAATAAACAACCCC
GCATCTAGATCGCCGCCATGCTCCACGCCCCGCCATCGGTAGGCGTCGTCGTAACCGTTT
CCTCGGTCATGCTTCCGTCATCTACCATTTCTGTGTGTATGTTATCTTCTTCAAGCCACT
CTTCCGAAAGAAGCAAAGAGGCTAGCACCATGTTATCTGCAAGTTGTGTTCGTCCTTGAG
TTTCAGTGTAAGAAAAAAACATGATTTAGTTGTTCCAACTTGACATGTTCTCCAGCACTC
GGTGGTGGTTGGTGCCATGCCATCAACCATGCGTATCCCCCATGTATATCTCTCTCTGGC
TGCCCTTCTTTCATGGAAAGTTCATCTTGATTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42430.3	437	8e-94	protein\|IQ calmodulin-binding motif domain containing protein, expressed
Brachypodium v1_2	Bradi4g01360.2	436	2e-108
Arabidopsis v10	None