barSeed - Barley Seed Development Database

Probe CUST_2079_PI390587928

Source Contig U35_18415

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2079_PI390587928	Hv_44K_v2	GACGGCATTGCGGTTATCAAGTTAAAAATATCGGCATTGCAATTGTCAAGTTAAAATGTC	1294	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73268.1	1396	2e-24	1325 - 1384	100	60 / 60	plus	ABC10075
JLOC1	JLOC1_48770.1	1339	8e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC10075	1383	3e-25	1295 - 1354	100	60 / 60	plus	ABC10075
Harvest35	U35_18415	1363	3e-25	1295 - 1354	100	60 / 60	plus

Contig Sequence (1363 bp)

>U35_18415 1363 Hv_44K_v2
CGGACACAAGACCACCCAGCACCCGCCGCCCGCCCGCCCGCCCGCCATGTCGTCCGCCGC
GCCGGCGCCGGCGCCGGAAGAGCAGCCGCCGCGCCCGGTGCGCTTCGGCATCATGGGCTG
CGCATCCATCGCGCGCAAGCTCGCGCGGGCGATGCTGCTGGCCGCGCCCGCCGCCGCCGT
GGCCGCGGTCGGCAGCCGCTCGGAGGCCAAGGCGCGGCTCTTCGCCGCCGACAACGGCCT
CCCCGCGGACACTCGTCTTCACGGCTCCTACGAGGCGCTCCTCGACGACCCGGCCGTCGA
CGCCGTCTACCTGCCGCTCCCCACCAGCCTCCACGTGCAGTGGGCCACCGCCGCCGCCGC
GCGGGGCAAGCACGTGCTCCTCGAGAAGCCCACCGCGCTCTGCGCCGCCGACCTCGACGC
CATCCTCGCCGCCTGCGACGCCAGCGGCGTCCAGTTCATGGACTCCACCATGTGGATGCA
CCACCCCCGCACCGCCAAGATGCGCGACCTCCTCCCCGCCGACGTCGGCGACGTCAGACT
CATAAACAGTCTGTTCAGCTTCCGAGCAAACGAAGATTTCCTCCAGAATGACATCAGGGT
AAAGCCAGACCTCGACGCCCTGGGCGCACTCGGCGATGCCGGGTGGTACTGCATCCGCGC
GATCCTGTGGGCCGTCGACTACGAGCTCCCGAAGAACGTGATCGCGCTCCCTGACCCCGT
CAAGAACCAAGCTGGCGTGCTCATCGCCTGTGGGGCGACGCTCTACTGGGCCGACGGGAA
GATGGCCACCTTCCACTGCTCTTTCCTCACCAACCTCACCATGGACCTGACCGTGGTCGG
CACGGACGGCACGCTCCACGTCACCGACTTCGTGATCCCGTACGAGGAGAAGTCCGGCCC
GTTCAGCGTGGCGTCCAAATCAAACTTTGCCGAGCTCCACACCGGATGGGCTCCGCAGCC
GAGCAAGCACGTTGTCATGACAGACCTGCCGCAGGAGGCCCTGATGGTCAAGGAGTTCTG
CAGGCTGGTGCAGGGCATCAGAGACGCCGGCGCCAAGCCTGAGAACAAGTGGCCGGCCAT
CACCAGGAAGACGCAGGTTGTGATGGACGCCGTGAAGGCTTCCATTGACAATGGATTCAA
ATCGGTCGACGTCGCCAGCTGAATAAAACACATCACCGGTCATTCCGGTATTATGTTCTT
CCAGAACATGGCGTAATTTGCTCAGACTGTACTTCTACGCGGCATGAAACTACTTATATA
TCGGAATAACTCAAATGATTCTCGTCGTGCCAAGGACGGCATTGCGGTTATCAAGTTAAA
AATATCGGCATTGCAATTGTCAAGTTAAAATGTCGTATTACTG

Homology of Contig U35_18415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26400.2	255	8e-111	protein\|uncharacterized oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi1g07560.1	367	2e-174
Arabidopsis v10	AT4G09670.1	362	4e-116	Oxidoreductase family protein \| chr4:6107382-6109049 REVERSE LENGTH=362