barSeed - Barley Seed Development Database

Probe CUST_20793_PI390587928

Source Contig U35_11345

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20793_PI390587928	Hv_44K_v2	AACAACAACACAATGTGCTGAAATTCACACAGAAGCTGAGAAGGTTGAGACCGGAGTCGA	691	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371534	3046	2e-24	2065 - 2124	100	60 / 60	plus	ABC20615
MLOC	MLOC_18286.1	2245	2e-24	1294 - 1353	100	60 / 60	plus	ABC20615
MLOC	MLOC_18286.2	1478	2e-24	1093 - 1152	100	60 / 60	plus	None
JLOC1	JLOC1_12649.1	2263	8e-25	1288 - 1347	100	60 / 60	plus
Harvest35	U35_11345	817	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_11345 817 Hv_44K_v2
GGGTGTCTGAAGACGAGAGCTCCAAGCATGGAGATATTGGGGAAGAAGAGGACGATGGAG
GCTGCAAAGGAGATGCAGAGGAGAGGGATGAGCCTGTGGAGGCTCAAATTGTTCGCAAAG
ACGTGGGCTTGGAGATTGAAGCTGCTAAGAGCGAGAGCCAAGCACCGGCAATGGTGGAGG
CTGTGGCAGACACCAAGGAGGCTGCTGCTGCTCCAAGAATGGAGAAAGAGGAGGAAGAGG
TGAAGGGCAGGAGGTCAGTCAGCAGCTGCTCCCCATCCACAGCACTGAAGGAGGACCGCA
AATTGCGACGGTTGGGCAGCACCAGGAGGCGTGTTTCCACCAACAGCAAGGCCTCCTCGA
GCTCTGATCGTGTCGACAGGCGGCACAGCTTCTCGGCGGAAATGGAGGCGCGGCGGTCGA
GCTTCTCGAGCTTGAAGGACTCGAGGAGGGCAAGCTTCTCCATCGACCGGGATGGCCGAA
GATGGAGCTTCACAATTGAGCAGGAGCACCTCGTCGCGGAGCCTAAGGTTTTGATGGCAT
CCAGGAAGGGTAAGAAAAATTCGTCCGAGGCCGAGTCGGAGAAGGACTGCCCTGTTCTTG
TTGCTGCACCAAACAGTGTGGAGGAAGCCCAAGAGTGCAACGATGATGATGGAAAGGAAG
AGGCCACACATTATTGTGGTGAGGAAGAAGGAACAACAACACAATGTGCTGAAATTCACA
CAGAAGCTGAGAAGGTTGAGACCGGAGTCGACGAGGAGAAAGCCGTTGAAGTGAGCAGGA
CAGAGGAAGAGAGTGGCGAATTGCCGATGCCTCTGAT

Homology of Contig U35_11345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g24540.1	846	2e-56	protein\|expressed protein
Brachypodium v1_2	Bradi2g16330.1	856	2e-69
Arabidopsis v10	None