barSeed - Barley Seed Development Database

Probe CUST_20786_PI390587928

Source Contig U35_23324

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20786_PI390587928	Hv_44K_v2	GCTATGGACGTTGTAAAATACAAATAGCTTTGTCCTCCTCTGTTGTTTATGCTTTTATTC	425	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.710	2.677	3.851	1.962	0.534	0.461
Raw	53.085	326.445	386.374	321.970	29.248	28.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77559.1	1331	2e-24	1260 - 1319	100	60 / 60	plus	ABC10053
MLOC	MLOC_77559.2	1218	2e-24	13 - 72	100	60 / 60	minus	ABC10053
JLOC1	JLOC1_51723.2	1345	8e-25	1156 - 1215	100	60 / 60	plus
JLOC1	JLOC1_51723.1	1537	8e-25	1348 - 1407	100	60 / 60	plus
Harvest35	U35_23324	533	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_23324 533 Hv_44K_v2
CTCGCCGGGGACGTTCAAAGCGTTCAGCGTGGTGGAGCACCCGGTGGTGGTGTCGACGGC
GGAGAAGCTGGGCAAGACGCCGGCGCAGGTGGCGCTGCGGTGGGGGGTCCAGGCGGGGCA
CAGCGTGCTCCCCAAGAGCACCAACGAGGAGAGGATCAGGGCCAACATCGACGTCTACGA
CTGGTCCATTCCCGGCGACCTCTTCGCCGGCTTCTCTGAGATCGAGCAGGCGAAGCTGAT
CCGAGGGAAGTTCTGGACTCACCCGGAAGGCGTGTTCAAATCCGAAGAGGAGATCTGGGA
TGGTGAAATATAGTCTCAACAGCCACTGTTCCTTGCGCGGAGGGCGGCTTGTTTTCGTAT
GCCGGAGGAGGCTGCCAACTCAACTGCCATGGCAACGGAATAACGCGGTAGTAAACTACT
CTGTTGCTATGGACGTTGTAAAATACAAATAGCTTTGTCCTCCTCTGTTGTTTATGCTTT
TATTCATTATATTAGTCAAAAATTCAAAGTTATGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38230.3	198	6e-52	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None