barSeed - Barley Seed Development Database

Probe CUST_20774_PI390587928

Source Contig U35_11350

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20774_PI390587928	Hv_44K_v2	GGACATTGCCTTAAAGCTCTCATTTAATGGAGTGAACCAATTTATCTACATCCAAACTTG	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374811	1811	2e-24	1438 - 1497	100	60 / 60	plus	ABC35052
Harvest21	ABC23887	378	3e-25	308 - 367	100	60 / 60	plus
Harvest35	U35_11350	372	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (372 bp)

>U35_11350 372 Hv_44K_v2
GTGATGTTTCTGGACAATTTAAGGGTCTTCGTCGTAGCCACGTCACCGAGTGCTTTTATT
GCATCTAGCTTTGTGATCAAGAAGATTGGCCTGAAGAAAGCTGGGGACATTGTGGTAAGA
GCAGTGCTAGCACACTTCATTTTGAATGAGAGGTTGCATATGTTTGGCGTGGTTGGTTGT
GCATTGTGTGTTGTTGGTTCAGTTGATATAGTGTTGCATGCCCCAATGGAAAGAAAGATT
GATTCAGTTAGCGAAATATGGCAACTCGCAACTAAACCAGGTTATCAGTGTTAAGGTAGT
GGACATTGCCTTAAAGCTCTCATTTAATGGAGTGAACCAATTTATCTACATCCAAACTTG
TGATTATATGTT

Homology of Contig U35_11350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None