barSeed - Barley Seed Development Database

Probe CUST_2076_PI390587928

Source Contig U35_18417

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2076_PI390587928	Hv_44K_v2	AAAGAACCATCCTGTTGTTCAGGTTCTTTTATGAGATTTTTGTGTGTGCATCTAAGCATT	741	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.531	4.833	1.276	0.715	0.239	0.369
Raw	301.503	440.875	97.301	93.981	9.613	17.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69815.1	1303	2e-23	1 - 58	100	58 / 58	minus	ABC05656 ABC09232
JLOC1	JLOC1_46291.1	1245	8e-25	1082 - 1141	100	60 / 60	plus
Harvest21	ABC09232	848	3e-25	48 - 107	100	60 / 60	minus	ABC09232
Harvest35	U35_18417	848	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (848 bp)

>U35_18417 848 Hv_44K_v2
GCCGCACTTCCCCAAGCCAGAGATCATGTTCAACGACATCACGGCGCTGCTGCTGCGGCC
GGGCGTGTTCAAGGACGCCGTCGACATGTTCGTGGAGCGCTACCGCGGCATGGGCATCGC
GGCCGTCGCAGGCATTGAGGCGAGAGGGTTCATATTTGGCCCGGCGATTGCGCTGGCCAT
CGGAGCCAAATTCATACCGCTGCGCAAACCCGGGAAGCTCCCAGGCGAGGTGATTTCCGA
GACTTATACGCTTGAGTACGGGACGGATTGCTTGGAGATGCATGTTGGCGCCGTCGAACC
TGGCGAGCGTGTGGTGGTGGTTGATGATCTGGTTGCAACCGGTGGAACACTTTCTGCAGC
TATAAAACTTCTTGAACGTGCCGCAGCTGATGTTGTTGAGTGTGCATGCCTCATTGGACT
CCCCAAGTTTAAGGATTTCTACAAGCTCGATGGAAAGCCAGTTTACATACTGGTGGAGTC
CCGCAAATAAAAAATGAAATGATGATGATTGATCAGAGAAAGGATGACAGCTTCATTCAT
TTGCAAGGGCGCGCACGGTGGATGTGCATTGATAAGTCTGCAGTACACTGTTAGGGGCAG
CTGCTATTGCTAAGTGTCTTGATGGAGAGGGTGAGATAGATGAGATGTAGTCTTCCTAGC
ACTAGTTTTTCCAGTAGTAGAGTATTTGATGAGAGCTTTGTAGTTATTTCTGTCGGGAAT
CACCGCTGTTAGCCGCAAAGAAAAGAACCATCCTGTTGTTCAGGTTCTTTTATGAGATTT
TTGTGTGTGCATCTAAGCATTAATTTATTCCATTGTCTCTAAAATTGAAGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_18417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42520.1	213	4e-101	protein\|phosphoribosyl transferase, putative, expressed
Brachypodium v1_2	Bradi5g14910.1	204	7e-106
Arabidopsis v10	AT1G80050.1	192	3e-76	\| Symbols: APT2, ATAPT2, PHT1.1 \| adenine phosphoribosyl transferase 2 \| chr1:30111708-30113261 REVERSE LENGTH=192