barSeed - Barley Seed Development Database

Probe CUST_20764_PI390587928

Source Contig U35_23330

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20764_PI390587928	Hv_44K_v2	TGATGGAGGACCATACTTCCACTTCGAGTGCCTACCCTTCCAAGCTGTTCGCCGATGCAC	944	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15202.1	3258	2e-24	1053 - 1112	100	60 / 60	plus	ABC02665
JLOC1	JLOC1_10417.1	3389	8e-25	1053 - 1112	100	60 / 60	plus
Harvest35	U35_23330	1022	3e-25	945 - 1004	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_23330 1022 Hv_44K_v2
GAAGATGAGACACCCCACCGTCCACGAGCCAAAGTGGAGGATGACCTTGAGATGGGCCTC
GACATCCTGAAGACCGCACGGCGCCGGTCAGATGAACTGAGTGACGAAGAGTTGGGCTCT
GCAAGCAATGGTGCAAGATATCGCCGGCGAGGTGCCGGGCTGGATCGGCACCGCGCTGCC
TGCTTTGGCCGTGCTCAGCCTGCGGAACAACTCGCTGGCCGGCGCCGTGCCGGAGTCGCT
CGGGAGGACGCCGTCGCTGCGGTCGCTCGTGCTCGCCTCCAACAACCTCTCCGGGAACCT
CCCTGACATGCGCGGCCTGGCGAGCCTCCAGGTGCTCGACGTCGGCGGCAACTCGCTCGG
GCCGGCGTTCCCGCGGCTCGGGAGGAAGGTGGCATCGGTGGTGCTGAGCCGGAACAAGTT
CACCGGGGGCCTGCCCGCCGCCGAGCTGACCTCCTTCTACCTGCTGGAGCATCTGGACGT
GTCGCAGAACCGGTTCGTCGGGCCATTCCCGCCGGCGCTGCTGTCGCTGCCGTCGCTCCA
GTACCTGAGCATCGCCGGGAACAGGTTCACCGGGGCGCTGTCCGACAAGGTGCCCTGCGG
CGACAACCTCCGGCTGGTCGACCTGTCGTCGAACCTCCTGATGGGGAGCGTGCCAGCCTG
CTTGAGGCCAGGCGGGAAGCCGGCGACGGTGGTGCTCTCGTCGGAGAACTGTCTGGACAG
AGGCGACGGTTCGCAGCACCCGTCGCCGTTCTGTCAGAACCAGGCACTGGCCGTGGGGAT
AGTTCCTCGTCACAGTGAAAAGAAGAAAGTTAGCCGGCACGCGGGCTTCATCGCCAGCAT
CGTAATGGCGGTCGTCGTCGCTGTCTCGCTCTTCGGCGCCATGGCCTTCTTCGCCGTCAG
GAAGATGACCATGGAAGGGGGGAAGACGAGACCCTCGGCGACATTGATGGAGGACCATAC
TTCCACTTCGAGTGCCTACCCTTCCAAGCTGTTCGCCGATGCACGTTACATATCCCAGAC
AG

Homology of Contig U35_23330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57780.1	840	7e-115	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi1g06100.1	799	2e-131
Arabidopsis v10	AT3G03770.1	802	3e-66	Leucine-rich repeat protein kinase family protein \| chr3:945303-948436 REVERSE LENGTH=802