barSeed - Barley Seed Development Database

Probe CUST_20760_PI390587928

Source Contig U35_23335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20760_PI390587928	Hv_44K_v2	AAATAGGGGTGAAAACAAATGGGATGCGGATGGGATAATGCTCTTACAACTTCCATTTCC	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360570	2123	2e-24	2021 - 2080	100	60 / 60	plus	ABC15337 ABC16360
MLOC	MLOC_23220.1	684	2e-24	58 - 117	100	60 / 60	minus	ABC15337 ABC16360
JLOC1	JLOC1_16058.1	1481	8e-25	1344 - 1403	100	60 / 60	plus
Harvest35	U35_23335	643	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_23335 643 Hv_44K_v2
CAACGAGGTGGTCGGCACATACGGATACATGGCGCCTGAGTACGTTATGCGTGGGAACTA
CTCCGTGAAATCGGATGTGTTCAGCTTCGGTGTCATGGTTTTGGAGATCGTGACGGGAAG
GAAGAACAGTGACACCTCACAATCTGAAGATCTCTTGACCACGATCTGGGAGCATTGGGC
GGCCGGAACAGTGCTGGAGGCAATGGACCCGTGCATGAACAACAGCTGCTCAGAGAGTGA
CGTGATGAGGTGCATCCAGGTTGGGCTCCTGTGCGTCCAGGAGAACCCTGTGGACAGGCC
ATTGATGTCGGCGGTGGCCATGATGATGCTTGGCAGCAACACGGTGTCTCTCGGTAGCCC
ATCAAAGCCGGCGTTTACGTTTTCCGCCAGACCGGTGCCGACACTGGAAATGGGTCACGT
AGGATTAGTTGATTGATACAATAATCAGTTTGCTCGTTGATAGTCATCAATTGTTTAATA
GGATGGAGAAACATGTAAGGCTTGTTACATGATTCGCAATTCTTATATATACATCAACTG
CAAATAGGGGTGAAAACAAATGGGATGCGGATGGGATAATGCTCTTACAACTTCCATTTC
CATAAAAAAAAAAAAAAAAAAACTCGAAACTATTCTCTCCCTC

Homology of Contig U35_23335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35310.1	671	4e-53	protein\|TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	5e-59
Arabidopsis v10	None