barSeed - Barley Seed Development Database

Probe CUST_2075_PI390587928

Source Contig U35_18418

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2075_PI390587928	Hv_44K_v2	GCTCATCTTAATTGTTTCATTGTTTCGAATATGTGATCAAGCAAGACGAGTGTTTCTTGT	1154	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.437	1.248	0.771	0.329	0.336
Raw	325.610	499.850	382.034	368.100	54.577	61.769

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12954.1	2527	4e-23	2471 - 2527	100	57 / 57	plus
Harvest21	ABC08797	1235	3e-25	22 - 81	100	60 / 60	minus	ABC08797
Harvest35	U35_18418	1235	3e-25	1155 - 1214	100	60 / 60	plus

Contig Sequence (1235 bp)

>U35_18418 1235 Hv_44K_v2
GGCTTCACAAGGCAGAGCAAATTCACATATGGCCTCGTGGTGGAAGAGATTACAACACGT
GATGAAACCAACAGTATCTGTACACATGGTTCTCGGGCAATGCCTAGTGGTGGCTTGAGC
ATGGATGGACCTCCCACAACCCTCAGTGGTACTGGTGTAGATCGAATGGCATTTCTGCAA
GCAAATATTACTCGAGACAATACAGAATTTGTAAATGGTGCAGTCATTGGCGACAGATGT
ATTTTCCAGCTGGATCAAGGTCTTGGCATTGGAAGCAAAAGCCCACTCTTCAACCGTCAT
CAGCTTACATTGACAAAGTTCATTAATTTAAATAATCAAGAGAAAGGTGTTGGCAAGCCG
CTGCCAGCTGTGTTGGTTCTTCATGGCCATTATGCAGGTTGTGTAGGAGATCTGCCAAGC
TATGATGCATTTACACTTGGAGGACCTTACTCAGTTAGGGGCTATGGTATGGGTGAACTG
GGTGCATCTAGGAATGTTCTGGAGGTTGCTGGTGAGGTGCGTGTACCTGTGAAGAACACA
TATGTTTATGGTTTTGCTGAACATGGCACCGACCTTGGGAGTTCCAAGGACGTGAAAGGG
AACCCTACTGAGTTCTTCCGACGGGTTGGCCATGGATCGTCATATGGTGTTGGCGTCAAG
CTTGGCTTGGTAAGAGGAGAGTACATTGTAGATCACAACACTGGGGCTGGAACCGTCTTC
TTCAGATTTGGCGAGAGATTCTGAATGCATTTCATTCAGCACATATCTTCAAGACTGGGA
TGTCTAATGCACAATTGAGGCCTTGAGTCTCGAAGTGGCTATGCATGTGGGTGTGAACGT
CAGGTGGCTTTTGTTCTGCTGAATAATGAAGTTTTGTTCTTTTTCTGAGGAAGAGAGATA
AGTTAGTGTCAGGGTGAGTTCTTTGCTTGTAGTAGGAAGTAAGGTTTATCTTGCAGAGCT
TCAAGCTGGTTGAATAGATGAAAGCTGAGCTCCTAGTGTTAGCAAGGAATGTTTTGACAA
GGCTTTCTGTCATGGTCAATTTGTTTCCATGTAACACTTTGTTGTTCAGTCGGTTAGCTT
AATTGACAACGCAGTGTTACTCCTTCCACGCATTATACAATGTAGCTAACTTATGGTGGG
TGGTAACTCGCTTGGCTCATCTTAATTGTTTCATTGTTTCGAATATGTGATCAAGCAAGA
CGAGTGTTTCTTGTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18418 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16440.1	818	4e-164	protein\|outer membrane protein, OMP85 family, putative, expressed
Brachypodium v1_2	Bradi1g66820.1	813	4e-168
Arabidopsis v10	AT3G46740.1	818	1e-131	\| Symbols: TOC75-III, MAR1 \| translocon at the outer envelope membrane of chloroplasts 75-III \| chr3:17216104-17219296 REVERSE LENGTH=818