barSeed - Barley Seed Development Database

Probe CUST_20759_PI390587928

Source Contig U35_23336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20759_PI390587928	Hv_44K_v2	GACTTGGAAGTGCCAGCTGTGTTTTCTTTACTTTCAGAGAGAAATGAGCTCTTTTGTTTA	782	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59218.2	1652	6e-24	107 - 165	100	59 / 59	minus	ABC21897
MLOC	MLOC_59218.1	1751	6e-24	107 - 165	100	59 / 59	minus	ABC21897
JLOC1	JLOC1_38524.2	1731	3e-24	1591 - 1649	100	59 / 59	plus
JLOC1	JLOC1_38524.1	1602	3e-24	1462 - 1520	100	59 / 59	plus
Harvest21	ABC21897	782	3e-25	720 - 779	100	60 / 60	plus	ABC21897
Harvest35	U35_23336	845	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_23336 845 Hv_44K_v2
TACTAGGCCCCCCCTCGAGCTTAAGCTTCATCAATTGCGGTTTGTTGAGGTACTCAAGCA
AGGTAAAAGAGATGAGGCTCTTCAGTATGCTAGGGCATACCTGGCGCCATTTGCTACCAT
ACACAAGGATGTAACCCAGAGGCTGATAGCCTCCATATTATGGGCCGGGCGCCTTGACCA
GTCACCATATACAGAGTTCTTAGTACCAACTAACTGGGAGAAGCTAGCTGAGGAGTTCTC
TCAACAGTTCTGCAATCTGAAGGGTCAATCTTCCACAGGTCCTATGGGCATGACAGTTGC
AGCTGGTGCTGAAGTGTTGCCAATTCTTCTTAAACTGATGACGGTACTCACTGCAAAAAG
GGAGTGGGAGTCTATGAAAGAATTTCCTTTCCCACTGGACCTCCGTAGGGAGTTTCAGTT
CCACTCATTGTTCATTTGTCCCGTGCTCCGTGAGCAAGGTAGCGATGAGAATCCTCCAAT
GCTTCTTCCATGTGGGCATGTCTTGTCGAAGCAGTCGACCGTGAAATTATCAAAGAACAG
CTCCCGATCTTTCAAATGCCCATATTGCCCGTTCGAAGCATTGGCATCTGAGTGTAAGCG
GCTACATATCTGAGGATTTCTTACTCTGTGATTGGCCATTTGTGTGCACCAGCCTTTGCT
ATCTCTTTTCCTTTGAACGGTGCACTTGCAAAGGTAATACATTATACTCAGGGTGCTCAA
CTCTGCTCATGTCTTGTATATAAAGCATGAAAGAGATGTCATAAGAACACACTGGTTTGA
TTGACTTGGAAGTGCCAGCTGTGTTTTCTTTACTTTCAGAGAGAAATGAGCTCTTTTGTT
TAAAA

Homology of Contig U35_23336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38940.2	387	9e-94	protein\|RMD5 homolog A, putative, expressed
Brachypodium v1_2	Bradi3g51260.2	387	2e-114
Arabidopsis v10	AT4G37880.1	388	2e-66	LisH/CRA/RING-U-box domains-containing protein \| chr4:17810183-17811349 FORWARD LENGTH=388