barSeed - Barley Seed Development Database

Probe CUST_20757_PI390587928

Source Contig U35_23338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20757_PI390587928	Hv_44K_v2	TTCCAAAACAGTTTGCTGGAACTGCAAGAAGTCTGGGCACATTGCCACTGAATGCAAGAA	647	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.362	0.862	1.878	2.057	0.744	1.157
Raw	3.684	17.421	35.919	63.276	7.929	13.458

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363800	1506	2e-24	686 - 745	100	60 / 60	plus	None
MLOC	MLOC_68967.2	1520	2e-24	793 - 852	100	60 / 60	minus	None
MLOC	MLOC_68967.1	1357	2e-24	803 - 862	100	60 / 60	minus	None
JLOC1	JLOC1_45677.1	1317	8e-25	455 - 514	100	60 / 60	plus
Harvest21	ABC20264	833	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_23338	835	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_23338 835 Hv_44K_v2
CCAGCACCGGCCTTCTCCCACCCACTCGCCGCCCGAGCGCCTCCGCGTGCCCGTACGCCG
GCGCCTCCACCCCGCCGACGGCGGCCTCCCTCCCCTGTACACCGCCCTGCCGCCGCCTGC
TCCCGCCCCATCGCCCTCGCCGCCAGATCCGTCCCTCCTCCTCTCGGGCCTCGGCAGATC
TGCGCGGCCGGCGGCCCGCCCCACCCCGACTGCCCTCCCCGAGCCATGGATCAAGTTATG
GTGAGTCCATCACCAAGCGCCAGCAGCGGCAGTGGCAAGAGCGCGGGTAGGGCCAAGAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGAAGCAAGAGTAGGAGCCGGAGCAGGAGC
AGAAGCAAGAGCAGCACCAAGAGTAAGAGCAGGAGCAGGAGTCGCAGCCGGAGCAGAAGC
CGAAGCCGAAGCCCTCGGCGAGATAGGTTGCGCAGCGAGCGTTCATCCCGCCGCAGCCGT
AGCCCACCTCGTCGTGGCCGCAGTCCTCCTCGTCGCAGCGAACGTCGTAGCCGCAGGGAT
ATTATTTGCAAGAACTGCAGGAGACCTGGCCACATTGCTAGGGACTGCCCATCTGCTTCT
ACCTGCAATAATTGTAATCTTCCAGGGCACTTTGCAGCAGAATGCACTTCCAAAACAGTT
TGCTGGAACTGCAAGAAGTCTGGGCACATTGCCACTGAATGCAAGAACGAGGCCTTATGC
CACACTTGCAGCAAGACAGGGCATATGGCACGCGACTGCCCGGCCTCGGGGTCAAACGCC
AAGCTATGCAACAACTGCTTCAAGCCGGGCCACATCGCGGTCGACTGCACCAACG

Homology of Contig U35_23338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60600.1	273	2e-62	protein\|zinc knuckle domain containing protein, expressed
Brachypodium v1_2	Bradi1g03737.1	280	2e-64
Arabidopsis v10	None