barSeed - Barley Seed Development Database

Probe CUST_20747_PI390587928

Source Contig U35_35319

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20747_PI390587928	Hv_44K_v2	TGTTGGGGAAAGTACATGTCAGTCTTCTCAAGCTACTTATGTTAAACACAGAGAGGGGCA	38	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6327.2	4033	7e-23	2604 - 2663	98	59 / 60	minus	ABC17426
MLOC	MLOC_6327.5	3442	7e-23	2017 - 2076	98	59 / 60	minus	None
MLOC	MLOC_6327.3	4039	7e-23	2604 - 2663	98	59 / 60	minus	ABC17426
JLOC1	JLOC1_4119.1	3982	4e-23	1320 - 1379	98	59 / 60	plus
Harvest35	U35_35319	785	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (785 bp)

>U35_35319 785 Hv_44K_v2
GGCGAATTGGGCCCTTTCGATAATGCTCGAGCGGCCGCTGCCCCTCTCTGTGTTTAACAT
AAGTAGCTTGAGAAGACTGACATGTACTTTCCCCAACAACGAGGAGTCCTTGTCATAAAA
TGCTTGTGCAAACTCATCAAATGTAAAGGGATGAACATCCATACTACCAAAATGCGTGTA
GACAAACCGGACAACCTGGAAGAGCTTTTTCACCATTTCAGGTGATGACTCCCAAGGTTT
TGTGGGAAATGGTTGTTTCATCCTGACACCTGGTGGAGGAAACCTGGCAAGTAAATCTTT
ACAAAGGGGGCAGCCATGTCTCCCAGTTGAAGAAAGATGAGCTGAACATCTTAACGGATT
AGGACCTGCTTGTAACTCACTGAGCTCAAGCTCCTCATCATCAACTAAAGTAGCCTGTTC
AGTTCGTAGTTCTGAGGATTCTGATTCATCAACTGAAAGATGGCACTCCACTGGAGGATG
CTCCGTCAAATCAGTAACTCTGCCACATGGCACCTTTCTTTTACTCGGTGGAGGTCTACT
CTTTTTGTTTACTTTCTTCCGTGGCAAAGTTTGTCTCTGCACTTGGGCAAGCTTTCGATC
ACAATCTTCGAATGGTCTCAATGACCTCAAGCAACCACTTTCATCAATGAAACTGGAGCA
ATCTTGAATTTCTGCAGTTTGGGAATACATTGCATGCCATACTGTCATTAGACCTTTGAG
CGGCCGCTACTGTTGCTGAAACAGTTGCACCCGCTGCGACTACAGCATCACAAGTGATTG
ATGTG

Homology of Contig U35_35319 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42750.1	360	9e-98	protein\|DDT domain containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None