- Probe CUST_20745_PI390587928
- Source Contig U35_11362
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20745_PI390587928 | Hv_44K_v2 | TCTTCTGGTTCCAGCTTCCTTCAACACCTTCGTCCAGAAACTCTGGCAGACATGGCGGCC | 27 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.144 | 0.048 | 0.516 | 1.854 | 2.089 | 3.668 |
| Raw | 56.185 | 25.887 | 287.538 | 1634.344 | 621.345 | 1215.923 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55976.1 | 4267 | 2e-24 | 3185 - 3244 | 100 | 60 / 60 | minus | ABC05623 ABC06682 ABC40598 |
| MLOC | MLOC_55975.1 | 3741 | 2e-24 | 2929 - 2988 | 100 | 60 / 60 | minus | ABC05623 ABC06682 ABC40598 |
| Harvest21 | ABC24463 | 207 | 3e-25 | 28 - 87 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06682 | 876 | 6e-22 | 39 - 95 | 98 | 56 / 57 | plus | ABC06682 |
| Harvest35 | U35_11362 | 208 | 3e-25 | 28 - 87 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2807 | 876 | 6e-22 | 39 - 95 | 98 | 56 / 57 | plus |
Contig Sequence (208 bp)
>U35_11362 208 Hv_44K_v2 GTTGGTGCATCCTCTCTCAGCATCTCCTCTTCTGGTTCCAGCTTCCTTCAACACCTTCGT CCAGAAACTCTGGCAGACATGGCGGCCGGGAAGCGCACCATCGGCCTGGCGATGGACTAC TCGCCGTCCAGCAAGGCCGCGACGAGGTGGGTGATCGAGAACCTGGTGAAGGCCGGCGAC CGGATCATCCTCATCCACGTCCTCCCCA
Homology of Contig U35_11362 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |