barSeed - Barley Seed Development Database

Probe CUST_20742_PI390587928

Source Contig U35_11365

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20742_PI390587928	Hv_44K_v2	AACAACCTCCCATTTACCCGGCCAAAGCGTATACACGCAGAGATAGCTATGTGTGTATGT	142	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364135	2104	2e-24	399 - 458	100	60 / 60	plus	ABC40867
MLOC	MLOC_56205.3	1975	2e-24	357 - 416	100	60 / 60	plus	ABC40867
MLOC	MLOC_56205.2	1895	2e-24	596 - 655	100	60 / 60	plus	ABC40867
MLOC	MLOC_56205.1	1400	2e-24	694 - 753	100	60 / 60	plus	None
JLOC1	JLOC1_36337.1	2601	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC21957	480	3e-25	143 - 202	100	60 / 60	plus
Harvest35	U35_11365	480	3e-25	143 - 202	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_11365 480 Hv_44K_v2
GATTCCTTTCCAACCTATAATCTTTAACCTCATAGCTTAGCTCTTGGACTCTCTCTACCA
TCGTCTCCATCACACCTAACCAATCTCGAGCTAGACCCACAAGAAGCGGTCGGCGACATC
AAATCCGTTCCCCTCTCCTGCAAACAACCTCCCATTTACCCGGCCAAAGCGTATACACGC
AGAGATAGCTATGTGTGTATGTGTATATAGCATGGCCTAATTGACCATGGACATCGCCGG
AGACGCCGGAGGCGGCCGTCGGCCCAACTTCCCCTTGCAGCTCCTCGAGAAGAAGGAGGA
CCAACCGTGCTCCAGCTCGGCTGCGGGGGGCGCCTCGGCGGGCGGCGGGAATGGAGCAGC
CGCTGGCGGTGCCGCCGGAGGGGAGATGCAAGTGCGGAAAGCGGTGCCCAAGCGGACGTC
GACCAAAGACCGGCACACGAAAGTGGAAGGCCGGGGACGGCGCATCCGGATGCCGGCGCT

Homology of Contig U35_11365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None