barSeed - Barley Seed Development Database

Probe CUST_20738_PI390587928

Source Contig U35_23340

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20738_PI390587928	Hv_44K_v2	TGAACTTTTTCTTTCGGCATGAGACACCTCTGGACCAAATTTCAGTAGTGACGAGAGTGG	694	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.130	2.564	1.109	0.787	0.344	0.425
Raw	943.157	1756.123	668.536	760.204	113.782	153.344

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36491.3	2086	7e-23	2023 - 2082	98	59 / 60	plus	None
MLOC	MLOC_36491.4	2076	7e-23	2013 - 2072	98	59 / 60	plus	None
JLOC1	JLOC1_23501.6	2166	4e-23	1905 - 1964	98	59 / 60	plus
JLOC1	JLOC1_23501.5	2160	4e-23	1899 - 1958	98	59 / 60	plus
JLOC1	JLOC1_23501.4	2197	4e-23	1936 - 1995	98	59 / 60	plus
JLOC1	JLOC1_23501.3	2184	4e-23	1923 - 1982	98	59 / 60	plus
JLOC1	JLOC1_23501.2	2194	4e-23	1933 - 1992	98	59 / 60	plus
JLOC1	JLOC1_23501.1	2207	4e-23	1946 - 2005	98	59 / 60	plus
Harvest35	U35_23340	785	3e-25	695 - 754	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_23340 785 Hv_44K_v2
CAACTGGAAGAGTAGACGCGCAACGACTCTGTGTAACAGGAGAATCTGCTGGTGGATTTA
CAACTTTAGCTTGCCTTGCTTTTAGACAGACTTTCAAGGCCGGTTCTTCTTTATACGGGA
TTGCTGACTTGGCTTCATTAAGGGCAGACATGCACAAGTTTGAGGCGTACTATATTGACA
ACCTTGTGGGGAATAAGCAGGCTTACTTTGAGAGGTCGCCAATAAACTTCGTTGAGAGAT
TTACATGTCCGGTCATTTTGTTTCAAGGATTGGATGACCCGGTTGTATCACCAGATCAGG
CAACAACAATATACAAGGCTATAAAGGACAAAGGTCTGCCTGTTGCTTTGGTTGAGTATG
AAGGGGAACAACATGGTTTCCGCAAGGCCAAGAACATCAGGTTTACCTTGGAGCAGCAGA
TGATGTTCTTTGCAAGATTGGTGGGACACTTCAAGGTGGCAGATAACATTGCTCCGATCA
GGATCGACAATTTTGATAAAGCCCCATGATTGTTTCGAAGGACAATTGACCGTCTCTCAG
TTGATGAGGGTGTTTTCGTGCCAACACGCCCACATGATCTCAACCTCCATGAAGCAGAAT
AAAGGGACTAAGGGAGTGAACTTCCTGGATTGTATCATTTCCTTGTAATCGTTTTAAAGT
GATGTGACAAGTATACTGCTTAAGCATCAACTAGTGAACTTTTTCTTTCGGCATGAGACA
CCTCTGGACCAAATTTCAGTAGTGACGAGAGTGGCGGCATTATGATTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_23340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11190.1	680	2e-98	protein\|OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed
Brachypodium v1_2	Bradi1g65740.1	674	7e-101
Arabidopsis v10	AT5G36210.1	730	1e-76	alpha/beta-Hydrolases superfamily protein \| chr5:14248202-14253272 REVERSE LENGTH=730