- Probe CUST_20734_PI390587928
- Source Contig U35_23344
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20734_PI390587928 | Hv_44K_v2 | TGCCGAGCTCGAGCAGGAGTTACATGAATATCAGTACAATATGGGTCTGCTCTTGATTGA | 370 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.209 | 1.154 | 1.188 | 0.640 | 0.412 | 0.404 |
| Raw | 624.293 | 873.275 | 829.314 | 651.372 | 157.880 | 172.178 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70120.2 | 1203 | 2e-24 | 414 - 473 | 100 | 60 / 60 | plus | ABC24344 |
| MLOC | MLOC_70120.1 | 1373 | 2e-24 | 231 - 290 | 100 | 60 / 60 | plus | ABC04846 ABC24344 |
| JLOC1 | JLOC1_46519.1 | 1362 | 8e-25 | 220 - 279 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20204 | 429 | 1e-24 | 371 - 429 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_23344 | 431 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (431 bp)
>U35_23344 431 Hv_44K_v2 CCCCTCTCTCTCTCTCTCCCCGTCTCCCCGCTCCTTTCCCAAATCTGACCGCAGCCGCAC GACGCACCTACCCAACCCAGAGCAGCAGCAGCAGCCGCCGAGACCTAGCCCGACCCGGCC CCTCGCGCGCCCGGGAAGCCGGCCTCCGCCGCGCCGCGCCGTGGCCGCCGGGCACCTCCC GGTAGGGGGCGGCGCCTCGTCTCTTTGATGCGCCGTGAAGGAATTGGGAGCAAGAAGCCG TGATGTTTACTCCGCAGGGGAAAGGATGGAACGGCTGGTCCACGCCGTCTCCAGGAAACC AGCGGGCCGGTGGTGGCGCTCCGCCCGCATCTGCGCCCCTTGGCAAGGCCAAAGGGACTT CACAGAGAGCTGCCGAGCTCGAGCAGGAGTTACATGAATATCAGTACAATATGGGTCTGC TCTTGATTGAG
Homology of Contig U35_23344 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |