barSeed - Barley Seed Development Database

Probe CUST_2072_PI390587928

Source Contig U35_20731

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2072_PI390587928	Hv_44K_v2	GTAATGCTCCCTACCGAGATTATGAACACACAGGACTTGTGCTGCCTGACATAATCAATC	612	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11832.1	2059	2e-24	710 - 769	100	60 / 60	plus	ABC12730 ABC37281 ABC37585 ABC43800
JLOC1	JLOC1_7884.1	2062	8e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC13402	675	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_20731	677	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_20731 677 Hv_44K_v2
GGAAAAGCCATCGGCCTCGGGTCGCTGCCGCCGTCGGCGTCTCCGACGGAGCTCTCCTCT
TCCCTTGCCGATGAGAACGGAGCACCTCTCTGCCAGCCATCTCTTGTTTTGAAGCCTTTA
GGTAAGAAAATATCTGAGGTAGGGTTGCTATGGAGTCGTCAGGTGACGAACATGCCATGG
AGAGTGATACTGAGACTGAAAGTGATCTGATCAGTGAGCTACCTGAAGACATCCTCCAGA
AAATCCTGTCATGCGCGAGGATTAGAACTGTCGTGCGGATGCGCAGGCTGTCTAGGAAGT
GGAGGGAACTCTGTGAAAGCCTGCAGTTCATACGCCTTGATTACAGAGATTTCGAACATT
GGAAGGCCGAGAAGTTTGCTCGTTTCGTTAACAACCTATTGCTTGTCCGTTGGAAAGTAG
ACTTGCACACGTTCCAGCTGCACTGGGATCCTCATACTCCCCTGAACTGCAACGATGTCA
GAATGTGGATTGGGTATGCGGTGAAGCATAACGTTAAAGTGCTCGATGTGAAACTTTGTC
TGTATGATAAGACCGTTTTACCTCCTGGCATTTTCACCTGCCGCTCGCTTCAGGAGCTAA
ATTTGCAGTGGGGTAATGCTCCCTACCGAGATTATGAACACACAGGACTTGTGCTGCCTG
ACATAATCAATCTTCCT

Homology of Contig U35_20731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57920.1	472	2e-78	protein\|OsFBL3 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None