barSeed - Barley Seed Development Database

Probe CUST_20716_PI390587928

Source Contig U35_11373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20716_PI390587928	Hv_44K_v2	AACCTGGATCTCTCCAACAAAATCCTGCTCAATGCCATCAGAGCCTTCTCGCCGCTGGTG	318	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359427	1946	2e-24	399 - 458	100	60 / 60	plus	ABC10851
MLOC	MLOC_36964.1	3433	9e-22	3 - 57	100	55 / 55	plus	ABC00385 ABC00840 ABC10851 ABC42711
JLOC1	JLOC1_23868.1	2419	5e-22	3 - 57	100	55 / 55	plus
Harvest35	U35_11373	452	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (452 bp)

>U35_11373 452 Hv_44K_v2
GAGATCGATCGGGCGAGCGAGCGCCATTGCCCTGCCAACCCCGTCGTGTAGGTGGGCAGC
AGTGAGTGAGTGAGCGAGTGAAGAGCGACCTCTGCTCTGTGGGGCTGAGGTATGGCGGGG
CTGAGGACTCTTGTTGCGGGGCTGTGGTTCTTGGCGGTGCTCCGGCTGGGCGCGGCGGCG
GATGCGAGGGTCGTCGGCGTGGACGGGCGGCGCGCCATTGCGTCGGCGGGGGAGGACTTC
GTGTGCGCCACCCTCGACTGGTGGCCGCCGGAAAAGTGCGACTACGGCACCTGCAGCTGG
GGCCGCGCCTCCCTCCTCAACCTGGATCTCTCCAACAAAATCCTGCTCAATGCCATCAGA
GCCTTCTCGCCGCTGGTGCTCCGGCTGGGCGGCTCGCTGCAGGACAAGGTGGTGTACGGC
ACGGCGGACCATGGAGGGCCGTGCGCGCCCTT

Homology of Contig U35_11373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None